PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G145200.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB_related

Protein Properties

Length: 1740aa MW: 191196 Da PI: 6.7902

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G145200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	1027	1067	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++ a + +G++ + ++ar++ R+ qck ++ Aqcoe2G145200.2.p 1027 DWTDEEKSNFIGALRSYGKD-FVKVARCVR-SRSKDQCKVFFS 1067 6***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.44E-12	793	855	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.076	805	856	IPR017884	SANT domain
SMART	SM00717	3.9E-6	806	854	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-4	809	854	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.443	1023	1074	IPR017884	SANT domain
SMART	SM00717	1.2E-6	1024	1072	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.94E-8	1027	1072	IPR009057	Homeodomain-like
CDD	cd00167	3.64E-5	1028	1066	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1740 aa Download sequence Send to blast
MPPEPLPWDR KKQHQQHDRS DGSIRSVARW RDSHHAYAPS AAHHHRWGDD FRRPQGHGKQ 60 GGSGYQQHHH QQLFTEDSGG HGFIPSRAYD RMVVSEYDNN FRSSSLSRGR NGSGRNTSRD 120 IRGPFSHKGF LWDSEDASTA SARQQHDISA QRSVSDLLTY TSHPQSVIEN SSSWHHLQPK 180 DQNDKLPTVN TLATGNRCDR DQSSSLVDWK PLKWNRSSSL SSSRGSGFSH TSSSRSMGAD 240 SDETKPDLPS GRLTPAQSPS GDAATTCVAS SVPFADTCPR KKPRLGWGQG LAKYEKQKVE 300 GSDETLSKNG LVPCASRAKP SQNILSMPDK SPRVAGISEC ASPVTTSSVA CSSSPGIDDR 360 SHMKAGNNDI DAYNLSGSPA HWFQIRLEEF AASLEHLSGG TNLSSLLSDL LQQDDVSSGD 420 SNIVTSTPMS KLLLVKSELS KALEKTECEI DMFENELKVL NSECKLNSPR SVASDSLHME 480 FALGSCENVV TCSKFLKKPV PLQLVSSSDM HDMPNLCNEA LEQIHGEVKD DDIDSPGTAT 540 SKFVEPSSME RAVSAYSMVN RDICSTGLVT ARPTFSEKLW FLPSANEEKS TSTSGGKGEN 600 QQTESSVSAH ALSNTGPRLN NLILDYNRES ARKACEVFHK LLSDNQSETD IWGSCSFSSQ 660 KSNSFVKQKL ASRKCFRTFK ERVLTLKYRA LQHLWKEDTR LLSIRKYKVK SQKRIESNSR 720 APHIVYQKHR SSVRSRFTSA GSLTLVPTSE IVDFTSKLLS DSKVIHYRDN LKMPSLVDEQ 780 EKRMLQFVSS NGLVEDPCAT EKERAMINPW TPKEKAVFLE KLGTIGKDFR KIASYLDHKT 840 TADCVEFYYK NHKSESFEKI KKKSELKKQE RGFPTNTYLM TSGQKWNREV NAGSLVLLGE 900 ASAIAAHADD SSKSQPTYSS RSFLGGHHCH KTCWGDDASY EKSSSGDICN DREATAADTL 960 AGICGALSSE AMSSCVTSSV DPSESFQDGK FHKISATDRS TTPKLMESID DEETCSDESC 1020 GEMDSVDWTD EEKSNFIGAL RSYGKDFVKV ARCVRSRSKD QCKVFFSKTH DSLGLVVMHT 1080 ENDREGSPLS DSNGGRSDTE DAGVLEIESA IYSTLSYSKM DIAINHLQTD KFDAGEKNRI 1140 EQLDHTQTDE PERSGEHNGA YLLNHDDGVT VGEGVILKKC QHEHEPGSVP YDGYSSVKRG 1200 RKKSDGSPEI LQPDNASETE SSFVCSLPVM VNGDVCVTHS TEAVKQLHAI IPAVESIGDE 1260 GPISVDAIEH NATSAEGIKT ESRCKQTVCL EGGEDRNGNN RTAIDINNSS SSTCSDLDPT 1320 ASSNSTHQTA ATNCQQSLSL SQNHQPQISL ELLHSVQKAQ IISWKQKENS PTSANSVLPG 1380 SHLIHYEDHL HQGSSSTLNF DGTRSENYSQ TVLSKKDVNG HTDSINSEKQ PIIPNSTVNG 1440 KYQPAQFIVQ DFHRVGSIVP HSLAELPLWS KNHEQSSISH MRTNSQGSSD AEEYSRRIGD 1500 VKLFGKILSH PSTSSKPNLT THETDNQAAS LRKSDGKPFD LKFTDQEKDR ALMVSKLQVK 1560 KYSGVEDYPA RTYGYWDGSR IQTGLSSLPD SSTLLAKYPA AFSDYAAASS CGDQQLLPAV 1620 SKRNDRNLSS VSSSGSLPDY QVYRGYDAVK MPFTVDAKRQ DPFSDQQKRN GWEGPSFQKQ 1680 SRGVVGMNVV GPGILVGGSC TGVSDPVAAI KMHYATTERY GMSGSLREGD SWRGDIGRP*

Sequence ? help Back to Top

Protein Sequence Length: 1740 aa Download sequence Send to blast

MPPEPLPWDR KKQHQQHDRS DGSIRSVARW RDSHHAYAPS AAHHHRWGDD FRRPQGHGKQ  60
GGSGYQQHHH QQLFTEDSGG HGFIPSRAYD RMVVSEYDNN FRSSSLSRGR NGSGRNTSRD  120
IRGPFSHKGF LWDSEDASTA SARQQHDISA QRSVSDLLTY TSHPQSVIEN SSSWHHLQPK  180
DQNDKLPTVN TLATGNRCDR DQSSSLVDWK PLKWNRSSSL SSSRGSGFSH TSSSRSMGAD  240
SDETKPDLPS GRLTPAQSPS GDAATTCVAS SVPFADTCPR KKPRLGWGQG LAKYEKQKVE  300
GSDETLSKNG LVPCASRAKP SQNILSMPDK SPRVAGISEC ASPVTTSSVA CSSSPGIDDR  360
SHMKAGNNDI DAYNLSGSPA HWFQIRLEEF AASLEHLSGG TNLSSLLSDL LQQDDVSSGD  420
SNIVTSTPMS KLLLVKSELS KALEKTECEI DMFENELKVL NSECKLNSPR SVASDSLHME  480
FALGSCENVV TCSKFLKKPV PLQLVSSSDM HDMPNLCNEA LEQIHGEVKD DDIDSPGTAT  540
SKFVEPSSME RAVSAYSMVN RDICSTGLVT ARPTFSEKLW FLPSANEEKS TSTSGGKGEN  600
QQTESSVSAH ALSNTGPRLN NLILDYNRES ARKACEVFHK LLSDNQSETD IWGSCSFSSQ  660
KSNSFVKQKL ASRKCFRTFK ERVLTLKYRA LQHLWKEDTR LLSIRKYKVK SQKRIESNSR  720
APHIVYQKHR SSVRSRFTSA GSLTLVPTSE IVDFTSKLLS DSKVIHYRDN LKMPSLVDEQ  780
EKRMLQFVSS NGLVEDPCAT EKERAMINPW TPKEKAVFLE KLGTIGKDFR KIASYLDHKT  840
TADCVEFYYK NHKSESFEKI KKKSELKKQE RGFPTNTYLM TSGQKWNREV NAGSLVLLGE  900
ASAIAAHADD SSKSQPTYSS RSFLGGHHCH KTCWGDDASY EKSSSGDICN DREATAADTL  960
AGICGALSSE AMSSCVTSSV DPSESFQDGK FHKISATDRS TTPKLMESID DEETCSDESC  1020
GEMDSVDWTD EEKSNFIGAL RSYGKDFVKV ARCVRSRSKD QCKVFFSKTH DSLGLVVMHT  1080
ENDREGSPLS DSNGGRSDTE DAGVLEIESA IYSTLSYSKM DIAINHLQTD KFDAGEKNRI  1140
EQLDHTQTDE PERSGEHNGA YLLNHDDGVT VGEGVILKKC QHEHEPGSVP YDGYSSVKRG  1200
RKKSDGSPEI LQPDNASETE SSFVCSLPVM VNGDVCVTHS TEAVKQLHAI IPAVESIGDE  1260
GPISVDAIEH NATSAEGIKT ESRCKQTVCL EGGEDRNGNN RTAIDINNSS SSTCSDLDPT  1320
ASSNSTHQTA ATNCQQSLSL SQNHQPQISL ELLHSVQKAQ IISWKQKENS PTSANSVLPG  1380
SHLIHYEDHL HQGSSSTLNF DGTRSENYSQ TVLSKKDVNG HTDSINSEKQ PIIPNSTVNG  1440
KYQPAQFIVQ DFHRVGSIVP HSLAELPLWS KNHEQSSISH MRTNSQGSSD AEEYSRRIGD  1500
VKLFGKILSH PSTSSKPNLT THETDNQAAS LRKSDGKPFD LKFTDQEKDR ALMVSKLQVK  1560
KYSGVEDYPA RTYGYWDGSR IQTGLSSLPD SSTLLAKYPA AFSDYAAASS CGDQQLLPAV  1620
SKRNDRNLSS VSSSGSLPDY QVYRGYDAVK MPFTVDAKRQ DPFSDQQKRN GWEGPSFQKQ  1680
SRGVVGMNVV GPGILVGGSC TGVSDPVAAI KMHYATTERY GMSGSLREGD SWRGDIGRP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-14	774	858	11	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-14	774	858	11	94	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264748.1	0.0	PREDICTED: uncharacterized protein LOC104602664 isoform X2
TrEMBL	A0A2G5C6B6	0.0	A0A2G5C6B6_AQUCA; Uncharacterized protein
STRING	Aquca_087_00001.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-103	MYB family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G145200.2.p