PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G145200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB_related

Protein Properties

Length: 1741aa MW: 191267 Da PI: 6.7902

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G145200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	1028	1068	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++ a + +G++ + ++ar++ R+ qck ++ Aqcoe2G145200.1.p 1028 DWTDEEKSNFIGALRSYGKD-FVKVARCVR-SRSKDQCKVFFS 1068 6***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.51E-12	794	856	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.076	806	857	IPR017884	SANT domain
SMART	SM00717	3.9E-6	807	855	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-4	810	855	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.443	1024	1075	IPR017884	SANT domain
SMART	SM00717	1.2E-6	1025	1073	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.94E-8	1028	1073	IPR009057	Homeodomain-like
CDD	cd00167	3.64E-5	1029	1067	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1741 aa Download sequence Send to blast
MPPEPLPWDR KKQHQQHDRS DGSIRSVARW RDSHHAYAPS AAHHHRWGDD FRRPQGHGKQ 60 GGSGYQQHHH QQLFTEDSGG HGFIPSRAYD RMVVSEYDNN FRSSSLSRGR NGSGRNTSRD 120 IRGPFSHKGF LWDSEDASTA SARQQHDISA QRSVSDLLTY TSHPQSVIEN SSSWHHLQPK 180 DQNDKLPTVN TLATGNRCDR DQSSSLVDWK PLKWNRSSSL SSSRGSGFSH TSSSRSMGAD 240 SDETKPDLPS GRLTPAQSPS GDAATTCVAS SVPFADTCPR KKPRLGWGQG LAKYEKQKVE 300 GSDETLSKNG LVPCASRAKP SQNILSMPDK SPRVAGISEC ASPVTTSSVA CSSSPGIDDR 360 SHMKAGNNDI DAYNLSGSPA HWFQIRLEEF AASLEHLSGG TNLSSLLSDL LQQDDVSSGD 420 SNIVTSTPMS KLLLVKSELS KALEKTECEI DMFENELKVL NSECKLNSPR SVASDSLHME 480 FALGSCENVV TCSKFLKKPV PLQLVSSSDM HDMPNLCNEA LEQIHGEVKD DDIDSPGTAT 540 SKFVEPSSME RAVSAYSMVN RDICSTGLVT ARPTFSEKLW FLPSANEEKS TSTSGGKGEN 600 QQTESSVSAH ALSNTGPRLN NLILDYNRES ARKACEVFHK LLSDNQSETD IWGSCSFSSQ 660 KSNSFVKQKL ASRKCFRTFK ERVLTLKYRA LQHLWKEDTR LLSIRKYKVK SQKRIESNSR 720 APHIVYQKHR SSVRSRFTSA AGSLTLVPTS EIVDFTSKLL SDSKVIHYRD NLKMPSLVDE 780 QEKRMLQFVS SNGLVEDPCA TEKERAMINP WTPKEKAVFL EKLGTIGKDF RKIASYLDHK 840 TTADCVEFYY KNHKSESFEK IKKKSELKKQ ERGFPTNTYL MTSGQKWNRE VNAGSLVLLG 900 EASAIAAHAD DSSKSQPTYS SRSFLGGHHC HKTCWGDDAS YEKSSSGDIC NDREATAADT 960 LAGICGALSS EAMSSCVTSS VDPSESFQDG KFHKISATDR STTPKLMESI DDEETCSDES 1020 CGEMDSVDWT DEEKSNFIGA LRSYGKDFVK VARCVRSRSK DQCKVFFSKT HDSLGLVVMH 1080 TENDREGSPL SDSNGGRSDT EDAGVLEIES AIYSTLSYSK MDIAINHLQT DKFDAGEKNR 1140 IEQLDHTQTD EPERSGEHNG AYLLNHDDGV TVGEGVILKK CQHEHEPGSV PYDGYSSVKR 1200 GRKKSDGSPE ILQPDNASET ESSFVCSLPV MVNGDVCVTH STEAVKQLHA IIPAVESIGD 1260 EGPISVDAIE HNATSAEGIK TESRCKQTVC LEGGEDRNGN NRTAIDINNS SSSTCSDLDP 1320 TASSNSTHQT AATNCQQSLS LSQNHQPQIS LELLHSVQKA QIISWKQKEN SPTSANSVLP 1380 GSHLIHYEDH LHQGSSSTLN FDGTRSENYS QTVLSKKDVN GHTDSINSEK QPIIPNSTVN 1440 GKYQPAQFIV QDFHRVGSIV PHSLAELPLW SKNHEQSSIS HMRTNSQGSS DAEEYSRRIG 1500 DVKLFGKILS HPSTSSKPNL TTHETDNQAA SLRKSDGKPF DLKFTDQEKD RALMVSKLQV 1560 KKYSGVEDYP ARTYGYWDGS RIQTGLSSLP DSSTLLAKYP AAFSDYAAAS SCGDQQLLPA 1620 VSKRNDRNLS SVSSSGSLPD YQVYRGYDAV KMPFTVDAKR QDPFSDQQKR NGWEGPSFQK 1680 QSRGVVGMNV VGPGILVGGS CTGVSDPVAA IKMHYATTER YGMSGSLREG DSWRGDIGRP 1740 *

Sequence ? help Back to Top

Protein Sequence Length: 1741 aa Download sequence Send to blast

MPPEPLPWDR KKQHQQHDRS DGSIRSVARW RDSHHAYAPS AAHHHRWGDD FRRPQGHGKQ  60
GGSGYQQHHH QQLFTEDSGG HGFIPSRAYD RMVVSEYDNN FRSSSLSRGR NGSGRNTSRD  120
IRGPFSHKGF LWDSEDASTA SARQQHDISA QRSVSDLLTY TSHPQSVIEN SSSWHHLQPK  180
DQNDKLPTVN TLATGNRCDR DQSSSLVDWK PLKWNRSSSL SSSRGSGFSH TSSSRSMGAD  240
SDETKPDLPS GRLTPAQSPS GDAATTCVAS SVPFADTCPR KKPRLGWGQG LAKYEKQKVE  300
GSDETLSKNG LVPCASRAKP SQNILSMPDK SPRVAGISEC ASPVTTSSVA CSSSPGIDDR  360
SHMKAGNNDI DAYNLSGSPA HWFQIRLEEF AASLEHLSGG TNLSSLLSDL LQQDDVSSGD  420
SNIVTSTPMS KLLLVKSELS KALEKTECEI DMFENELKVL NSECKLNSPR SVASDSLHME  480
FALGSCENVV TCSKFLKKPV PLQLVSSSDM HDMPNLCNEA LEQIHGEVKD DDIDSPGTAT  540
SKFVEPSSME RAVSAYSMVN RDICSTGLVT ARPTFSEKLW FLPSANEEKS TSTSGGKGEN  600
QQTESSVSAH ALSNTGPRLN NLILDYNRES ARKACEVFHK LLSDNQSETD IWGSCSFSSQ  660
KSNSFVKQKL ASRKCFRTFK ERVLTLKYRA LQHLWKEDTR LLSIRKYKVK SQKRIESNSR  720
APHIVYQKHR SSVRSRFTSA AGSLTLVPTS EIVDFTSKLL SDSKVIHYRD NLKMPSLVDE  780
QEKRMLQFVS SNGLVEDPCA TEKERAMINP WTPKEKAVFL EKLGTIGKDF RKIASYLDHK  840
TTADCVEFYY KNHKSESFEK IKKKSELKKQ ERGFPTNTYL MTSGQKWNRE VNAGSLVLLG  900
EASAIAAHAD DSSKSQPTYS SRSFLGGHHC HKTCWGDDAS YEKSSSGDIC NDREATAADT  960
LAGICGALSS EAMSSCVTSS VDPSESFQDG KFHKISATDR STTPKLMESI DDEETCSDES  1020
CGEMDSVDWT DEEKSNFIGA LRSYGKDFVK VARCVRSRSK DQCKVFFSKT HDSLGLVVMH  1080
TENDREGSPL SDSNGGRSDT EDAGVLEIES AIYSTLSYSK MDIAINHLQT DKFDAGEKNR  1140
IEQLDHTQTD EPERSGEHNG AYLLNHDDGV TVGEGVILKK CQHEHEPGSV PYDGYSSVKR  1200
GRKKSDGSPE ILQPDNASET ESSFVCSLPV MVNGDVCVTH STEAVKQLHA IIPAVESIGD  1260
EGPISVDAIE HNATSAEGIK TESRCKQTVC LEGGEDRNGN NRTAIDINNS SSSTCSDLDP  1320
TASSNSTHQT AATNCQQSLS LSQNHQPQIS LELLHSVQKA QIISWKQKEN SPTSANSVLP  1380
GSHLIHYEDH LHQGSSSTLN FDGTRSENYS QTVLSKKDVN GHTDSINSEK QPIIPNSTVN  1440
GKYQPAQFIV QDFHRVGSIV PHSLAELPLW SKNHEQSSIS HMRTNSQGSS DAEEYSRRIG  1500
DVKLFGKILS HPSTSSKPNL TTHETDNQAA SLRKSDGKPF DLKFTDQEKD RALMVSKLQV  1560
KKYSGVEDYP ARTYGYWDGS RIQTGLSSLP DSSTLLAKYP AAFSDYAAAS SCGDQQLLPA  1620
VSKRNDRNLS SVSSSGSLPD YQVYRGYDAV KMPFTVDAKR QDPFSDQQKR NGWEGPSFQK  1680
QSRGVVGMNV VGPGILVGGS CTGVSDPVAA IKMHYATTER YGMSGSLREG DSWRGDIGRP  1740
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-14	775	859	11	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-14	775	859	11	94	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264747.1	0.0	PREDICTED: uncharacterized protein LOC104602664 isoform X1
TrEMBL	A0A2G5C6B6	0.0	A0A2G5C6B6_AQUCA; Uncharacterized protein
STRING	Aquca_087_00001.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-104	MYB family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G145200.1.p