PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G103600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33891.1 Da PI: 9.0068 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 22 | 66 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT++E +l+ +a + + ++ +W ++a++++ g+t ++ + + Aqcoe2G103600.2.p 22 SKWTQQENKLFENALAIYDKDmpdRWQKVANMIP-GKTVMDVFNQY 66 58********************************.***98887776 PP | |||||||
2 | Myb_DNA-binding | 45.6 | 1.6e-14 | 128 | 172 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r++ +Rt+ q+ s+ qky Aqcoe2G103600.2.p 128 PWTEEEHKLFLLGLKKYGKGDWRNISRKFVITRTPTQVASHAQKY 172 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.841 | 19 | 71 | IPR017884 | SANT domain |
SMART | SM00717 | 2.0E-9 | 20 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 20 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-12 | 22 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-7 | 22 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.18E-8 | 23 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 119 | 175 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.136 | 121 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-17 | 123 | 177 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-17 | 124 | 176 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.5E-13 | 125 | 175 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-13 | 128 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.83E-11 | 128 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MKWGMEILAP YSNWILEDSK SSKWTQQENK LFENALAIYD KDMPDRWQKV ANMIPGKTVM 60 DVFNQYKELE NDVSDIEAGL IPLPGYTTSS FSLEWMNEHD DYDGLKQSCG PGIKRTRPSD 120 HERKKGVPWT EEEHKLFLLG LKKYGKGDWR NISRKFVITR TPTQVASHAQ KYFIRQHSGG 180 KDKRRSSIHD ITTVNCIEGS PLPDNNNPSS PDHSMLSQQP TGGYPAKTHF GWNQPHNRGN 240 MIFRSKHGDL ITPPTYGITS NEMKLQGHNL QGVTIHGSQV IPQRTAIQMH SSQCHPH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-15 | 24 | 89 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021278855.1 | 1e-132 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-111 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2G5EUG5 | 0.0 | A0A2G5EUG5_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_004_00289.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-82 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G103600.2.p |
Publications ? help Back to Top | |||
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