PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G102700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 322aa    MW: 37155.7 Da    PI: 10.1415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G102700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.8e-1914100799
                        .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +s  ++++ l +p +f+++++  kees++ +l+ +sg +W+vkl  +k+ +++++++GW++F +++ L   +++vF+++g+++f   v++f+
  Aqcoe2G102700.1.p  14 HSIFMTTQHLEIPPDFLKHIQ--KEESVMAVLKCPSGSRWDVKL--SKRENGTFIQDGWQNFLRDHSLGNYEVLVFRYNGDMCF--DVQIFD 99 
                        5555667779*******7776..5699*****************..9*************************************..****99 PP

                        S CS
                 B3  99 k 99 
                        k
  Aqcoe2G102700.1.p 100 K 100
                        8 PP
2B3651.1e-20237319897
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +  l+s+ l++p  f+++h  k  ++++++l+d++g+ W+vk+  + +++ y+++ GW  Fv++n+Lk+gD+++F+l+g  + +l+v+ +
  Aqcoe2G102700.1.p 237 EARLSSQYLYIPAVFTKAHFPK--RKTEVILKDRKGKAWTVKF--SPGKENYFFG-GWPAFVHDNKLKAGDTCIFELVG--KLKLRVHTI 319
                        55678889***********733..5679***************..****999999.********************998..566677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-223101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-243102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-16799No hitNo description
PROSITE profilePS5086313.4938101IPR003340B3 DNA binding domain
SMARTSM010193.2E-109101IPR003340B3 DNA binding domain
PfamPF023621.4E-1614100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-25222320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-23224320IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-21229320No hitNo description
PROSITE profilePS5086314.692230321IPR003340B3 DNA binding domain
SMARTSM010191.8E-14231317IPR003340B3 DNA binding domain
PfamPF023622.6E-19238320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEEDNRPKFY KIVHSIFMTT QHLEIPPDFL KHIQKEESVM AVLKCPSGSR WDVKLSKREN  60
GTFIQDGWQN FLRDHSLGNY EVLVFRYNGD MCFDVQIFDK TGSEKLNGIY IETHQEPGMT  120
RKENEESKPQ KTLVEPSCKS DGQPRELVKI SGKRQYRPPP KCVGSTRNYQ PRACKIVRGV  180
EAVALERNKT EDRSLTRGKR YSQVKGNLPT VDQKEKVGKD AMSFTSRPPQ FERYLSEARL  240
SSQYLYIPAV FTKAHFPKRK TEVILKDRKG KAWTVKFSPG KENYFFGGWP AFVHDNKLKA  300
GDTCIFELVG KLKLRVHTIR V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.18e-24VERDANDI