PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G099900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 504aa    MW: 57499 Da    PI: 6.3139
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G099900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-18160206148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT eEd ll+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Aqcoe2G099900.1.p 160 KGQWTDEEDRLLIKLVKQHGERKWAQIAQKLE-GRAGKQCRERWHNHL 206
                        799*****************************.*************97 PP
2Myb_DNA-binding55.51.3e-17212254145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++ WT+eE++ lv+a+++ G++ W+ Ia++++ gRt++ +k++w+
  Aqcoe2G099900.1.p 212 KDTWTEEEEKMLVRAHEKVGNK-WAEIAKRIP-GRTENAIKNHWN 254
                        679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.148155210IPR017930Myb domain
SuperFamilySSF466895.53E-30159253IPR009057Homeodomain-like
SMARTSM007172.8E-17159208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-27161214IPR009057Homeodomain-like
PfamPF139211.7E-20163223No hitNo description
CDDcd001671.64E-15163206No hitNo description
PROSITE profilePS5129420.65211261IPR017930Myb domain
SMARTSM007174.7E-17211259IPR001005SANT/Myb domain
CDDcd001673.99E-13214257No hitNo description
Gene3DG3DSA:1.10.10.604.8E-21215259IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MITPRICQYA SFMEERSSFG THVLERNHHF LLPTPPLTAI ERFLRSPNDF SQKNIQTNYH  60
HHHLKREKPE VSRNGYLDFS HLNASSSSNL GSGNGFSLTS PTLQDLSFVD GFFVEEDSFY  120
FNQESGFEGE VRLRNKNTQR VGKKAKGGGG GSSNSAFLIK GQWTDEEDRL LIKLVKQHGE  180
RKWAQIAQKL EGRAGKQCRE RWHNHLRPDI KKDTWTEEEE KMLVRAHEKV GNKWAEIAKR  240
IPGRTENAIK NHWNATKRRQ NSRRNNKKAA TQDGKNQPTI LQDYIRNKSV KADTSTPSSS  300
TLTSTNSTVF NDPSNLIYFS DSSFTDDSIS LISHSNEDEL LFIQKFFENV NNPQPSEEST  360
TTLWSRNENT YNDDGHYCQN PLAFNFLDSS KFSSSTDNSL FDIEETGVSS STTPISEVYS  420
NNSTQKEESG NTSHLYSDLY LSNLLDGVSP LPYMDNYQYL QYENQNFDFS SLSTEEDSAY  480
NNNGKKEMDL IEMVTSSQFC QRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-451582602104C-Myb DNA-Binding Domain
1msf_C5e-451582602104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262919.11e-127PREDICTED: transcription factor MYB29
TrEMBLA0A1U8A8G31e-126A0A1U8A8G3_NELNU; transcription factor MYB29
STRINGXP_010262919.11e-126(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-57myb domain protein 119