PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G045800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 272aa    MW: 31512.4 Da    PI: 7.4509
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G045800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.8e-36251172103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sw +++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ +++         weF+++ Fkkg+k+l
  Aqcoe2G045800.1.p  25 FLTKTYQLVDDPNTDHIVSWGDDQTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKTVSDR---------WEFANEFFKKGEKHL 107
                        9***************************************************************9999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i+r+k +
  Aqcoe2G045800.1.p 108 LSEIHRRKAS 117
                        *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3816108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5621114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.07E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAFMVERCED LVMSVDPQKG VPAPFLTKTY QLVDDPNTDH IVSWGDDQTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFKKTVS DRWEFANEFF KKGEKHLLSE IHRRKASQNS  120
QQHYHDSPPQ FISPDQSFGW LNETPVPLSH QESDFLSTLS EHNQKLRRKN FMLLSELTHM  180
KKLYNDIIYF LQNHVKTVPL DHQSLISQGA YKFNIESQYP QSQSPFGVQC HKPCSSSTSS  240
ATLTEESNST VKLFGVPLCG KKRLHHERID D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212111717123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169KLRRKN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246178.11e-131PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ7XHZ07e-90HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A2G5EWJ90.0A0A2G5EWJ9_AQUCA; Uncharacterized protein
STRINGAquca_004_00776.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-88heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]