PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe2G043500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 26796.5 Da PI: 8.4726 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.9e-08 | 76 | 99 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+ f+ t C+yG++C+F+H Aqcoe2G043500.1.p 76 KPKPCMKFFSTSGCPYGESCHFMH 99 7789******************** PP | |||||||
2 | zf-CCCH | 30.6 | 5.7e-10 | 141 | 167 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC++f C++Gd+C+FaHg+ Aqcoe2G043500.1.p 141 YKTKLCNRFNTDEGCRFGDKCHFAHGE 167 9************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.69 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.065 | 38 | 58 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 39 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.258 | 74 | 102 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-8 | 76 | 99 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 76 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.23 | 76 | 101 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-6 | 76 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-15 | 140 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-4 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.962 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-9 | 141 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-7 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MEPYQKRFRS EKGGYWSNHR VSDQFGNGGS GGGGGNQQCK RFNTPEGCPF GSNCRFRHVS 60 SDGQDNSTQG LSSGGKPKPC MKFFSTSGCP YGESCHFMHY IPGGLSSLGL APIVSLSAAP 120 SVSFQRKAVP IGDPSISING YKTKLCNRFN TDEGCRFGDK CHFAHGERDL RLPNNQSQGN 180 IRRAPREGQG IDPLEYRNEG YDISNLGTFP NTADLAPQGY GQVTPPGVTG SDGSANYVTA 240 SGSENLRVY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247477.1 | 1e-109 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A2G5EWL4 | 0.0 | A0A2G5EWL4_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_004_00792.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-13 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe2G043500.1.p |