PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G021300.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YA
Protein Properties Length: 291aa    MW: 31686.3 Da    PI: 8.9484
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G021300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1002.4e-31118174158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        ++p+YVN+KQy++I++RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  Aqcoe2G021300.4.p 118 EDPVYVNPKQYNGIMRRRQSRAKAEIERKL-IKVRKPYLHESRHQHALRRQRGCGGRF 174
                        58****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-35116177IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.591117177IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-26120174IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-22120142IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-22151174IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVTKEGKTQG DGGLNGSDTV CKDVVTSALP QSGLEGNQGP GHRHLQQLAS IAPPTGVEYL  60
VSQTQPELVG HSIACAAYPY PDPYYGGLLT AYGAPTLVNP QLLGMHHTRM PLPLEMAEDP  120
VYVNPKQYNG IMRRRQSRAK AEIERKLIKV RKPYLHESRH QHALRRQRGC GGRFVNTKKR  180
NDGTQQTPEN GTGSASVAPN TKPSTPPGSA VTNQFTGKLN ASDGQEEFEK QPKHTYSNDD  240
SNDNCYQHQR DFRLSAFHPL TGERGEEGDC SGQLRGSISV RQASCRALAI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18118188272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278970.15e-97PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_010278972.15e-97PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_010278973.15e-97PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA0A2G5DY180.0A0A2G5DY18_AQUCA; Uncharacterized protein
STRINGAquca_014_00766.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-40nuclear factor Y, subunit A9