PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G003200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MYB | ||||||||
Protein Properties | Length: 558aa MW: 60572.1 Da PI: 5.4382 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l Aqcoe2G003200.3.p 40 KGPWTSTEDAILVDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ Aqcoe2G003200.3.p 93 KGAFTAEEEHKIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.609 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-30 | 39 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.18E-11 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 25.983 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 93 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-26 | 95 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-11 | 95 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MSGTTSESDD GVLSKDQTDS SSFDEGSCGG SIGGGTVLKK GPWTSTEDAI LVDYVKKHGE 60 GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTAEE EHKIIELHAK MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PDVRLQAYSE NQKAQNTNDF NGGDTHHVMQ 180 ASNFDIPEVI FDHLKSNQGV LSYAPPLPDI SLGSMLNHGL GSSQNYSFMS HTMHQHKRLR 240 GSEILFPGFN STVTNAFAPL DLFQNDTCGK TNQSFGSTFP YDPDPNGKNP STFGMIPGSH 300 AILNGNFSTS KPIPRSLKLE LPSLQYPETD LGSWGMSSSQ PPSLDSVDAF IQSPSPTRPV 360 QSDCVSPRNS GLLDALLHES QTLSSAKNQS SEKSSNSCVV TPGDIVDSSA LNVCEAEWEE 420 YGDPISPLGR SAASVFSECT PASGSSLDET PAGRALCGSE VKQEPIEHVT TPDEGRQITP 480 QLSFPRPDAL LDGAWFEQRS ECAKDQSVLA DAISTFIGED FYGDYKQIPA ASSNQGWGGG 540 SYFWNNLPAV CQMSELP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 38 | 141 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010251854.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
Refseq | XP_010251855.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
Refseq | XP_010251856.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
TrEMBL | A0A2G5DYU9 | 0.0 | A0A2G5DYU9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_014_00928.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-123 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G003200.3.p |