PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G497000.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 545aa    MW: 59750.6 Da    PI: 8.7652
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G497000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056789123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  Aqcoe1G497000.2.p 67 FVCEICNKGFQRDQNLQLHRRGH 89
                       89*******************88 PP
2zf-C2H212.60.00041143165123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k +  +s+ k H +t+
  Aqcoe1G497000.2.p 143 WKCEKCSKKYAVQSDWKAHSKTC 165
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.93E-76689No hitNo description
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355120108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.93E-7138163No hitNo description
SMARTSM00355140143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MMSGDGHHLS IPSSVRGFVQ EHNSNPNPNP NSTNPVVKKK RNLPGTPDPD AEVIALSPKT  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIRKKVYIC PEKSCVHHDA  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALAEESAR FTSVATANLN FRTDSIGNNP QSSGLPHGFG SRGGHDMINI  240
PQFCPVYAAN DPSNTLDSDG PKPRLSLWLD HQANSHQPNP IDVASNSDAY MGSNSTGLAD  300
LLQMASSNLF GSSGMVDYSG MPSQWINRCT GEATNANLSL STSPRGLKKE DESKGNMVES  360
LASLYSSNEN QQSNPGPMSA TALLQKAAQM GATRSSPSFV GGFGVVSSSS SDTTSYNPHS  420
HGQQRNEFHQ LFRQAKQQEN MNDFMMNKIS TAPGNTPTGN ADMYNMLNLS DTAHNLDRLM  480
MPHNGVDHPQ LKLRSSTETV EQSLTRDFLG VGGEASRPFL QQELAKFASM GGSTMDMSQY  540
NGNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-37139208372Zinc finger protein JACKDAW
5b3h_F1e-37139208372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193105KLKQRTSKEIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264716.10.0PREDICTED: zinc finger protein JACKDAW
RefseqXP_010264717.10.0PREDICTED: zinc finger protein JACKDAW
TrEMBLA0A2G5D4Z10.0A0A2G5D4Z1_AQUCA; Uncharacterized protein
STRINGAquca_027_00051.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-106C2H2-like zinc finger protein