PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G466400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 243aa    MW: 26913.5 Da    PI: 8.5183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G466400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-203584255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  Aqcoe1G466400.1.p 35 KFRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 84
                       89*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-353598IPR001471AP2/ERF domain
CDDcd000181.98E-183591No hitNo description
PfamPF008477.1E-133584IPR001471AP2/ERF domain
PROSITE profilePS5103222.6823592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-303592IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-223592IPR016177DNA-binding domain
PRINTSPR003672.7E-103647IPR001471AP2/ERF domain
PRINTSPR003672.7E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MPPRGRGSVV VAATTTAAAA TTDTAAAKNQ SKEVKFRGVR KRPWGRYAAE IRDPWKKTRV  60
WLGTFDSAED AARAYDAAAR SLRGPKARTN FTSPPTNFPH HHLGFQQQQQ NFNDPQYNHH  120
QHRFLHQEQE HQDQLIQVVQ RPTSSSHSST IESFTGTRGT RVSSVAAISA PRRREHPPVL  180
PDDCHSQCDS SSSVIDGDRD NGDRDIASSS FNKPPRPFDL NFPPLDDADI TSDDFQSTAL  240
CL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-19351021475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770784.18e-59PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016484344.18e-59PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803392e-47ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A2G5D6991e-178A0A2G5D699_AQUCA; Uncharacterized protein
STRINGAquca_027_00311.11e-179(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.18e-28ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]