PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G443600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family G2-like
Protein Properties Length: 387aa    MW: 42704.1 Da    PI: 7.4318
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G443600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.57.5e-3449103155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprl+WtpeLHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Aqcoe1G443600.1.p  49 KPRLKWTPELHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 103
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.55346106IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-3247104IPR009057Homeodomain-like
SuperFamilySSF466893.23E-1748104IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-2349104IPR006447Myb domain, plants
PfamPF002491.3E-1051102IPR001005SANT/Myb domain
PfamPF143795.1E-24148194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MYHHNHHNGK NSFPSTRMSI PQERSHMFLQ GNGNACGGDA GLVLSTDPKP RLKWTPELHE  60
RFIEAVNQLG GADKATPKTV MKLMGIPGLT LYHLKSHLQK YRLSKNLHGQ ANPGNNKTGF  120
MGMVAAGERM CEGNGALTTG SQPNKNLQIS EALEMQIEVQ RRLNEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AQETLGKQKV GGLDDAKVHI SQLVSKISTE CLNPGPPDCS LDSCLTSSCE  240
GSQKDQEMPC ITLTPYHHHN DNTNNAVVGL TEEHHLQANE ALWCQNIKET KLFPSCSLKK  300
DTEKTMFPAQ KSSSDFSLRI PSQREKENNG GSISDMRPKA GDSIQLGNEN KSKAFGLPYL  360
TSKLDLNVHD DNDTASQLDL NGFSWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2249105258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2249105258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2249105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2249105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2249105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2249105157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2249105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2249105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2249105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2249105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2249105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2249105258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021283548.11e-146myb-related protein 2-like
RefseqXP_021283549.11e-146myb-related protein 2-like
RefseqXP_021283550.11e-146myb-related protein 2-like
RefseqXP_021283552.11e-146myb-related protein 2-like
SwissprotQ9SQQ91e-113PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2G5CAD80.0A0A2G5CAD8_AQUCA; Uncharacterized protein
STRINGAquca_072_00114.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-105G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]