PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G406800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 666aa MW: 73448.1 Da PI: 7.6466 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7.2e-19 | 332 | 431 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + Aqcoe1G406800.2.p 332 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQPEGLPLRIQDIKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLD-P 421 99**************************666677788***************9989999999***9.********************766.6 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 e++lv+++++ Aqcoe1G406800.2.p 422 EGKLVMGFRK 431 6666666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-31 | 324 | 435 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-20 | 329 | 434 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.45E-23 | 330 | 431 | No hit | No description |
SMART | SM01019 | 1.4E-21 | 332 | 432 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-16 | 332 | 431 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.11 | 332 | 433 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.96 | 591 | 641 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.1E-11 | 596 | 638 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MAAVSSSSSS VYCMNAICGV TSSIRWTHGW RLRSGGFANL CERCGSAYEQ SAFCDIFHLK 60 ESGWRECYTC SKRLHCGCIA SKSLLVLTDN GGVQCINCIR SSELSNIQSD ENPAGISMTT 120 TNNVGELQLT SLDYKMGSDD NGVKELMLSN MEGKERNNFL QSQKDDANGS LGQLKREQGL 180 SLVREVGSTT FSNFNETLFG ATQFAKQNNH KDHVGGKDTY ESLPQTCLTM TLGVSSGAAS 240 LAQPLVSSIV EGREQSKMSL QQGQRPRPRT SKMGIGIAPE ASKDNHPQLR VARPPIEGRG 300 RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP 360 INQPEGLPLR IQDIKGKEWL FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRLD 420 PEGKLVMGFR KSASNCASVK DTQPAIPNAP NENFFSGVIE NLPRMSGQPG LLQSFKGSTD 480 PHLNVVSERL HSADGDANLC KAEKQGGRPN GGLLLQPEKK KSRNIGSKSK RLLIDNEDAL 540 ELKLTWEEAH DLLRPPPRAK PNVVKIDEFD FEEYEEAPIL GKKTIFTSLS SGGQDQWAQC 600 DSCSKWRRLP VDVFLPVNWT CSENAWDSKR SACSVPNELS PMELENLLRL NMDVGAVREG 660 RKEKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-68 | 310 | 434 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252057.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2G5CME0 | 0.0 | A0A2G5CME0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_045_00208.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G406800.2.p |
Publications ? help Back to Top | |||
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