PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G404800.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bZIP

Protein Properties

Length: 352aa MW: 38544.4 Da PI: 5.6104

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G404800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.9e-10	193	250	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ++ l++e Aqcoe1G404800.2.p 193 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLYQRDTTGLTAE 250 9*****************************************9999888777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-16	189	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.496	191	254	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.67E-10	193	244	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-9	193	247	No hit	No description
Pfam	PF00170	9.3E-9	193	244	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.55E-23	194	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
METTTTTTQD PSNPNSPFKS SHSNPNNRIS HHRRAHSEVN FHIPNDLDLV FDGSNCSFDD 60 IGGDNGSEDD LFCTYMDMDK IGSKIEQHDS QSAAAAADAN AIINNANNID FTTTTTTTSS 120 LDQNNSAAAA GGLFDEKKDN NINVKPTSRH RHSNSVDGSS MSRGSESLFG DAMEAKKAMP 180 PDKLAELWTL DPKRAKRILA NRQSAARSKE RKARYILELE RKVQTLQTEA TTLSAQLTLY 240 QRDTTGLTAE NTELKLRLQA MEQQAQLRDA LNETLKQEVE RLKVATGEMM SPGESFNLGL 300 HNMPYGPASF FPQQQDQLGR LQGLDISSSR GSHLVKTEGS SISASESNTT F*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

METTTTTTQD PSNPNSPFKS SHSNPNNRIS HHRRAHSEVN FHIPNDLDLV FDGSNCSFDD  60
IGGDNGSEDD LFCTYMDMDK IGSKIEQHDS QSAAAAADAN AIINNANNID FTTTTTTTSS  120
LDQNNSAAAA GGLFDEKKDN NINVKPTSRH RHSNSVDGSS MSRGSESLFG DAMEAKKAMP  180
PDKLAELWTL DPKRAKRILA NRQSAARSKE RKARYILELE RKVQTLQTEA TTLSAQLTLY  240
QRDTTGLTAE NTELKLRLQA MEQQAQLRDA LNETLKQEVE RLKVATGEMM SPGESFNLGL  300
HNMPYGPASF FPQQQDQLGR LQGLDISSSR GSHLVKTEGS SISASESNTT F*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253091.1	1e-138	PREDICTED: transcription factor RF2b isoform X2
Swissprot	O22873	4e-91	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2G5CMF2	0.0	A0A2G5CMF2_AQUCA; Uncharacterized protein
STRING	Aquca_045_00222.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	5e-91	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G404800.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]