PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G402600.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 621aa    MW: 69994.7 Da    PI: 4.3413
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G402600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-10569618147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r++W+  E++ l+dav+++G g Wk I        ++R + ++k++w+++
  Aqcoe1G402600.2.p 569 RKKWSSLEEQTLIDAVQEYGRGKWKCILDNYHeifENRNEVDLKDKWRNL 618
                        789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.419564620IPR017930Myb domain
SuperFamilySSF466891.51E-13566619IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-11568620IPR009057Homeodomain-like
SMARTSM007170.0034568620IPR001005SANT/Myb domain
PfamPF002492.3E-8569618IPR001005SANT/Myb domain
CDDcd116605.06E-16570620No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MEQNIQKSWV LEFLLRQPVE DQIVSHFISA LPLSSLDHHL RKTLLLRNIS SKIQKGLISE  60
KILESLELIE EIDYQKGIKI SQSMKDAYYT VAVDCTVKFL KEDPKNFSEY NNVIGRIWRS  120
RVLDMERGKE IHLVLDWSKE LRGVLEKAVH DVSACDYIIM EDTRNDALEA VGLFLRQVTE  180
EMGPSFLEFT AGEVGEDVED EVEMGQMDST EDPGTGLDEH NRNVAEINCS DIDADTSVDG  240
PQVRTNASVD DQGGVRQPVT INALLDDHVG VRQPETMNEK FDEVQVPFSA SVDDQVRVIE  300
AETIHEKVDE VMVSNNASMD VQVGVGQPET MNEKVDEVRI PTNASLDDHI GVRQPETSNE  360
KVDEGQVSTK ASIYDQAVVR QTSSLDPLGD LEEYHDTISG DTYFQINANC DVESSDVRSK  420
KSYPVPTPDV REVREALKSS ILDLNDMVED PLPDALCTAA TIIADMAKEG VSNVQSAENE  480
NEVDISDRSV DSGCEAVQDK EGNYRNLTAA SRPSLMERNS TAHTVEWDNE SESSSEEPRN  540
RPHLPSPKSR IVSPLRREEI RNNTGRRKRK KWSSLEEQTL IDAVQEYGRG KWKCILDNYH  600
EIFENRNEVD LKDKWRNLTK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1566570RKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CMG10.0A0A2G5CMG1_AQUCA; Uncharacterized protein
STRINGAquca_045_00237.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-14TRF-like 5