PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G399600.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 180aa MW: 20309.3 Da PI: 8.1189

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G399600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.2	4.1e-15	12	93	11	98
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ ++l +p +f+eehg++ s +l+ ++g +W++ l r+ gr+v+ +GWkeF++ L++g + F+++g+s+f v +++ Aqcoe1G399600.2.p 12 SEDCQLEVPSEFVEEHGNQ--LSDVGVLKVRTGDTWNIGL--RRFAGRIVFNGGWKEFADHYSLDAGYCLFFTYSGNSRF--DVVICD 93 67899*********877..666778888******..********************************9999..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.998	2	95	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-18	4	94	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.0E-10	6	95	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.24E-17	13	94	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.7E-11	13	93	IPR003340	B3 DNA binding domain
CDD	cd10017	2.17E-14	15	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MKRSKFFRLI GSEDCQLEVP SEFVEEHGNQ LSDVGVLKVR TGDTWNIGLR RFAGRIVFNG 60 GWKEFADHYS LDAGYCLFFT YSGNSRFDVV ICDPGDAEII YPTKPVKFKE PMLDVETVLP 120 VTKSNGTEKK FVKKLSITCN KENLRESVLS AGKHHQEKQI IELGKSLSIR FLYNLCSCS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5EQK5	1e-117	A0A2G5EQK5_AQUCA; Uncharacterized protein
STRING	Aquca_005_00157.1	1e-118	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	7e-20	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G399600.2.p