PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G390300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 542aa    MW: 60339.1 Da    PI: 5.9067
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G390300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4471.2e-1361715411374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++++++c +avs+gd+ +a +l+ +l++++s +g+p+qRl ay++e+L a+la ++s++ykal+++e +    se l+++++++ev+P++k
  Aqcoe1G390300.1.p 171 LKQVIIACGKAVSDGDMMAAGWLMGELRKMVSVSGEPIQRLGAYMLEGLVAKLALTGSSIYKALRCKEPT---GSELLSYMHILYEVCPYFK 259
                        57899****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f++l aN aI ea++ge+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg+++ +s   +   l+ +g+rL+k+Ae+++vpfef++  
  Aqcoe1G390300.1.p 260 FGYLSANGAIAEALKGETRVHIIDFQIAQGSQWISLIQALAARPGGPPHIRITGIDDYTSAyaRDGGLHIVGQRLSKLAESFKVPFEFHA-G 350
                        *********************************************************998899999************************.8 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a +  ++ele+L v+pgEalaVn++l+lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+l+yysa+f+s+++ 
  Aqcoe1G390300.1.p 351 AMSGCEVELETLGVRPGEALAVNFALMLHHMPDESVSTANHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYSAVFESIDVR 442
                        9999**************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpre++eri+vE+++l+re+vn++acegaer+erhe l+kW++r+++aGF+p+pls  ++++++ ll++++++ yr+ee++g+l+lgW++r+
  Aqcoe1G390300.1.p 443 LPREHKERINVEQHCLAREVVNIIACEGAERVERHEVLGKWKARFRMAGFTPYPLSPVVNATIRNLLENYSEK-YRLEEKDGALYLGWMNRA 533
                        ***********************************************************************65.****************** PP

               GRAS 367 LvsvSaWr 374
                        Lv+ +aWr
  Aqcoe1G390300.1.p 534 LVTSCAWR 541
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.094145522IPR005202Transcription factor GRAS
PfamPF035144.2E-134171541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQSSRNPEEL GGPHKLYYHH MQGESYCLPS NYQTLDHSLS SDDCSQVTRY GSQSSHENYC  60
TLESSSSSSS YTVYHSPSNG SPPSQKDSQS YPSDPYHSPD NIHGSPISAS CITDDVDDLR  120
NKLRELETMM LGPDSDIVDS LDSTFQNENN QSSSEPEQWK QMMEVIPRGD LKQVIIACGK  180
AVSDGDMMAA GWLMGELRKM VSVSGEPIQR LGAYMLEGLV AKLALTGSSI YKALRCKEPT  240
GSELLSYMHI LYEVCPYFKF GYLSANGAIA EALKGETRVH IIDFQIAQGS QWISLIQALA  300
ARPGGPPHIR ITGIDDYTSA YARDGGLHIV GQRLSKLAES FKVPFEFHAG AMSGCEVELE  360
TLGVRPGEAL AVNFALMLHH MPDESVSTAN HRDRLLRLVK SLSPKVVTLV EQESNTNTAA  420
FFPRFLETLN YYSAVFESID VRLPREHKER INVEQHCLAR EVVNIIACEG AERVERHEVL  480
GKWKARFRMA GFTPYPLSPV VNATIRNLLE NYSEKYRLEE KDGALYLGWM NRALVTSCAW  540
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-631735416375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272334.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010657429.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010657430.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_019079174.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2G5ER710.0A0A2G5ER71_AQUCA; Uncharacterized protein
STRINGAquca_005_00234.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]