PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G367500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 689aa    MW: 79603.4 Da    PI: 6.6386
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G367500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1911.6e-2872162190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fYn YA++vGFsvrk+++++s+ n+eit rtf+Cs eg+r ++ k+ e++ r+ a trtgCka++ + k+k  +kw+vt++++ HnH+l+
  Aqcoe1G367500.1.p  72 NFYNYYASRVGFSVRKNSTYRSRINNEITGRTFCCSLEGSRGSKCKSFEERVRNVADTRTGCKAMMAIWKNKvGEKWVVTQVVEVHNHTLV 162
                        6**********************************************9***********************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2472162IPR004330FAR1 DNA binding domain
PfamPF105515.1E-32284378IPR018289MULE transposase domain
PROSITE profilePS5096610.039547585IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-4560587IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MANTTKNAPE LTELIMLDMI ENSSSEGLET TEPNIDEKVQ KIINEEVNED GDNIIGRPCV  60
GMEFDSQDEA YNFYNYYASR VGFSVRKNST YRSRINNEIT GRTFCCSLEG SRGSKCKSFE  120
ERVRNVADTR TGCKAMMAIW KNKVGEKWVV TQVVEVHNHT LVTPTKRYLL RSQRKMEPIQ  180
KKIAEDMRSV GIRTSLMVDF LASEVGGVQN VGFTRKDVNN YLNATRQKEL AVGDAQALLD  240
HLQKQQLDNP SFSYSIQVDS EGRMTNFFWA DARSRIDYQY FGDVVCFDPT YGTNRYDMPF  300
VPIVGVNHHS QTVLFGGALL YSETEESFAW VMRTWMNAMN GKQPNVILTD QESAIGGAVA  360
HVLPNCRHIY CLWHICRNGI KHLAREINTQ KDFWKAFNDC LYDYETIEEF EIGWNQMLVK  420
YKLVENKWLK TLFEKREKWA SVYARDKFCA GMYTTQRSES INSYFDKYLK KSLPLYEFMK  480
QYERAVVDRR EEENKADFDT YYRRPILRVY MEIEKEGAKL YTREIFYEFQ EQVFQVYNVW  540
KEGHEQVART VEFEPATQSA KCSCLLFECV GYLCRHVLKI FMVEDVQNIP EQYILKRWTK  600
DAKSGSLMAN ESENNLVKSG DSVTSRYCRI CQEGVNIASK ASPYAAVFDV AMEGFARTLR  660
DVEIALKSLS LDSNLCSTCP IKHSKAFT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245233.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245234.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245238.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_010245239.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_010245240.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U7YXG20.0A0A1U7YXG2_NELNU; protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U7YZY60.0A0A1U7YZY6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010245233.10.0(Nelumbo nucifera)
STRINGXP_010245238.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-149FAR1-related sequence 5