PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G341500.2.p
Common NameSTM2
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family TALE
Protein Properties Length: 376aa    MW: 42199.2 Da    PI: 6.7898
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G341500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-093023362155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        k +yps++++  LA+++gL+++q+ +WF N+R ++
  Aqcoe1G341500.2.p 302 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 336
                        569*****************************885 PP
2ELK37.74.4e-13256277122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK  LlrKYsgyLg+LkqEF+
  Aqcoe1G341500.2.p 256 ELKVKLLRKYSGYLGGLKQEFM 277
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-18119163IPR005540KNOX1
PfamPF037903.5E-20120158IPR005540KNOX1
SMARTSM012561.4E-24169220IPR005541KNOX2
PfamPF037915.2E-21173219IPR005541KNOX2
PROSITE profilePS5121310.79256276IPR005539ELK domain
SMARTSM011881.1E-6256277IPR005539ELK domain
PfamPF037894.8E-9256277IPR005539ELK domain
PROSITE profilePS5007112.714276339IPR001356Homeobox domain
SMARTSM003894.0E-12278343IPR001356Homeobox domain
SuperFamilySSF466896.42E-19278353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27281340IPR009057Homeodomain-like
CDDcd000864.10E-12288340No hitNo description
PfamPF059202.5E-16296335IPR008422Homeobox KN domain
PROSITE patternPS000270314337IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEDGGVGSSS NSYSLMGYGE NVCGSGSGSG SGVSSSMMMK PFMTCASSSS SHHFSSNNQN  60
PNTNNNNNNS SSLMMILNKD NYINNNNNNN NNNQLCYFME NNNTTTNTTT DHHDSDSVSA  120
MRAKIMSHPH YSRLLAAYIN CQKIGAPPEA VLKLEEAYAS GEAMSRGAPK SSLGEDPPLD  180
QFMEAYCEML TKYEQELTKP FKEAMVFMSR IELQLKALTV SSSDTGYHEV ADLNGLSEVY  240
GDANDNYVDP RAEDRELKVK LLRKYSGYLG GLKQEFMKKK KKGKLPKEAR QQLVDWWSRH  300
HKWPYPSESQ KLALAESTGL DQKQINNWFI NQRKRHWKPS EDLQFAVMEG MHPHFYMNMN  360
NITNPFSMDC TPTLL*
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8543360.0KC854336.1 Aquilegia coerulea STM2 (STM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.11e-143homeobox protein SBH1
SwissprotP466081e-122HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLS5MLI10.0S5MLI1_AQUCA; STM2
STRINGAquca_032_00057.11e-162(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-110KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]