PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G341500.1.p | ||||||||
Common Name | STM2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | TALE | ||||||||
Protein Properties | Length: 377aa MW: 42256.2 Da PI: 6.7898 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.1 | 1.7e-09 | 303 | 337 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Aqcoe1G341500.1.p 303 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 337 569*****************************885 PP | |||||||
2 | ELK | 37.7 | 4.4e-13 | 257 | 278 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK LlrKYsgyLg+LkqEF+ Aqcoe1G341500.1.p 257 ELKVKLLRKYSGYLGGLKQEFM 278 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-18 | 119 | 163 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.5E-20 | 120 | 158 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.4E-24 | 169 | 220 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.3E-21 | 173 | 219 | IPR005541 | KNOX2 |
SMART | SM01188 | 1.1E-6 | 257 | 278 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.79 | 257 | 277 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.9E-9 | 257 | 278 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.714 | 277 | 340 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-19 | 279 | 354 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.0E-12 | 279 | 344 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 282 | 341 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.08E-12 | 289 | 341 | No hit | No description |
Pfam | PF05920 | 2.5E-16 | 297 | 336 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 315 | 338 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MEDGGVGSSS NSYSLMGYGE NVCGSGSGSG SGVSSSMMMK PFMTCASSSS SHHFSSNNQN 60 PNTNNNNNNS SSLMMILNKD NYINNNNNNN NNNQLCYFME NNNTTTNTTT DHHDSDSVSA 120 MRAKIMSHPH YSRLLAAYIN CQKIGAPPEA VLKLEEAYAS GEAMSRGAPK SSLGEDPPLD 180 QFMEAYCEML TKYEQELTKP FKEAMVFMSR IELQLKALTV SSSDTGGYHE VADLNGLSEV 240 YGDANDNYVD PRAEDRELKV KLLRKYSGYL GGLKQEFMKK KKKGKLPKEA RQQLVDWWSR 300 HHKWPYPSES QKLALAESTG LDQKQINNWF INQRKRHWKP SEDLQFAVME GMHPHFYMNM 360 NNITNPFSMD CTPTLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC854336 | 0.0 | KC854336.1 Aquilegia coerulea STM2 (STM2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889118.1 | 1e-142 | homeobox protein SBH1 | ||||
Swissprot | P46608 | 1e-120 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | S5MLI1 | 0.0 | S5MLI1_AQUCA; STM2 | ||||
STRING | Aquca_032_00057.1 | 1e-163 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-110 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G341500.1.p |
Publications ? help Back to Top | |||
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