PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G302400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-X1 | ||||||||
Protein Properties | Length: 951aa MW: 103574 Da PI: 8.1754 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 16.3 | 2.2e-05 | 330 | 348 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H Cqk CH GpC pC+ Aqcoe1G302400.1.p 330 CGRHYCQKMCHMGPCEPCR 348 ******************6 PP | |||||||
2 | zf-NF-X1 | 21.9 | 3.9e-07 | 452 | 469 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++lCH G+CppC Aqcoe1G302400.1.p 452 CGIHHCNELCHAGDCPPC 469 ****************** PP | |||||||
3 | zf-NF-X1 | 19.5 | 2.1e-06 | 546 | 564 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC Aqcoe1G302400.1.p 546 CGQHSCESLCHIGHCPPCL 564 ******************6 PP | |||||||
4 | zf-NF-X1 | 16.8 | 1.5e-05 | 656 | 672 | 1 | 17 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG+H C ++CH+ pC+p Aqcoe1G302400.1.p 656 CGMHACARTCHPFPCDP 672 ***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 7.06E-6 | 147 | 219 | No hit | No description |
PROSITE profile | PS50016 | 8.671 | 155 | 218 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.214 | 158 | 216 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 158 | 215 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00438 | 0.023 | 275 | 293 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7 | 277 | 292 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.86E-9 | 320 | 368 | No hit | No description |
SMART | SM00438 | 0.0011 | 330 | 349 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.3E-5 | 330 | 348 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.50E-7 | 384 | 426 | No hit | No description |
SMART | SM00438 | 0.021 | 394 | 413 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.27 | 394 | 411 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.02E-7 | 442 | 475 | No hit | No description |
SMART | SM00438 | 1.9E-5 | 452 | 471 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.3E-5 | 452 | 469 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 15 | 508 | 519 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.94E-7 | 536 | 580 | No hit | No description |
SMART | SM00438 | 3.0E-4 | 546 | 565 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.0E-4 | 546 | 563 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.70E-5 | 593 | 641 | No hit | No description |
SMART | SM00438 | 0.034 | 603 | 621 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.9 | 603 | 620 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 4.7E-4 | 656 | 688 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.003 | 656 | 672 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 72 | 690 | 712 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.15 | 697 | 718 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 6.3E-6 | 829 | 894 | IPR001374 | R3H domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 951 aa Download sequence Send to blast |
MSVEHNNNNN SNNTTTTSSS NNNNNSRRRD AGSRNNNSQR KEWIPKGFPS TITPSSSTTL 60 VLNPNPNPNP NLTATSSKTS NFNGASVSSE VLSSTTPSLV TASLIDQTNR NIGKFDRNKK 120 YGDTRVRGEV RGRGVDFSSV PQLVQELKDK LIKGNVECMI CYDMVRRTAP IWSCSSCFSI 180 FHLNCIKKWA RAPTSVDLST TEKNNQGINW RCPGCQSVQL SSAKDIRYIC FCGKRPDPPF 240 DLYLTPHSCG EACGKPLDRV ISRSSGDCDD DDVRCPHVCV LQCHPGPCPP CKAFAPPRLC 300 PCGKKTITTR CFDNKSALTC GDKCNKILEC GRHYCQKMCH MGPCEPCRVP IDAVCFCEKE 360 SQLVFCGEIT VKGEMKLSDG VFSCSSVCGG RLNCGNHVCG QICHPGHCGD CELMPARIKT 420 CCCGKTMLQK ERASCLDPIP TCPQICGKLL PCGIHHCNEL CHAGDCPPCM IVVSQSCRCG 480 SSSRSVECSR KMDEKFVCEK ACGRKKNCGR HRCSERCCPL STSKSQLLGG WDPHLCSMIC 540 GKNLRCGQHS CESLCHIGHC PPCLETIFTD LTCACGKTSF PPPLPCGTPP PSCENPCLVP 600 QPCGHSSAHS CHFGDCPPCS VPVAKECIGG HVSLRNVPCG SKDIRCNQLC GKTRICGMHA 660 CARTCHPFPC DPSSVSGTSS GSKSSCRQTC GAPRTDCRHT CTAVCHPLAL CPDARCEFPV 720 TITCSCGRIT ATVPCDAGGI SGGFHVDSIF EVSVVQKLPV PLQPVEENGK KVPLGQRKLV 780 CDEECAKMER KRVLADAFDI STLNLDVLHF GENSIVSDLL VDLYRRDPKW VLSIEERFKY 840 LVSGKNKGGT ANGLRVHVFC PMLKEKRDAI RHIAERWKLS VHAAGWEPKR FLVVHVTPKS 900 KVPSRMLGPK GSLPMNVSHP LVFDPLVDMD PRLVVSLLDL PVILSEQQLH * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081933.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A2G5D137 | 0.0 | A0A2G5D137_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_032_00102.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G302400.1.p |