PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G292900.5.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HB-other

Protein Properties

Length: 1121aa MW: 125867 Da PI: 8.5518

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G292900.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.7	4.6e-14	30	78	9	57
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ql++Le l+ +++yps++e e+ A +l+Lt +qV+ WF rR kek+ Aqcoe1G292900.5.p 30 LLQLQTLEHLYSEDKYPSHKELEDFALSLNLTYKQVRGWFVERRRKEKR 78 569*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.2E-11	22	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-13	23	79	IPR009057	Homeodomain-like
CDD	cd00086	1.38E-11	27	79	No hit	No description
Pfam	PF00046	1.4E-11	30	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-13	31	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	32	79	IPR001356	Homeobox domain
Pfam	PF15612	7.0E-6	623	664	IPR028942	WHIM1 domain
Pfam	PF15613	6.1E-10	757	828	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence Send to blast
MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL 60 TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV 120 DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGQRNGP TCAQNQRMAK KRKVSKSPIS 180 QLEVNTKKSV SGNKHGMGKG LMTVWRATNA GARGYPMGVN TTDKYITDVY FNSASANSRK 240 PLQHEMRKKE SHKLTKKQGR AGNKLLERRK RAIVSSSKAD NPKKPHHAEC KLALEGLRSQ 300 EYRNGTTKLV DDEELELREL QAGPNPLTCS AHLASNTLHT CSLCKDLLAR FPPQSVMMKQ 360 PLCVQPWGSL PELVKKLFKD SLLLGRIHAT LLKLLFSDVG MAVNSGFHSH ASKDYRFLGF 420 LQTVKEQEFI LKLWNRCLNP ITWPEILRQV LIAAGFNSKQ RDFRRIPSIK DDNLLAGYGL 480 RPGTLKGEMF SILSEQGNNG LKVLELAKDF RVVKLHLTNS AKELELLIRS TLSSDITLFE 540 KISPSTYRLR SNLLNCIGAG DCQSDSEDSG SIDGASEESI TNSCDESELD SSKTSLALVK 600 HKKHSTKKSD TLIEYNEIDE MDSGEQWLLA LMESEYSELS IEEKMNTLVA LVDLTSAGSS 660 TRVEARESVT AENLASIQHH GGAKIKRSVA KQNNLVKPFW SNSESMDVVK EMDAPPGKHS 720 VKWNGLKKND SRVPDASKTN ATESIDEAGL DRHPLQSIYL GSDRRFNSYW LFLGPCNAKD 780 PGHRRIYFES SEDGHWEVID TKEALYSLLS VLDGRGSREA YLLAALMRLE GFLCEAMCNN 840 ITSDNDMRHS TQSDRSSLGI ISSDGSSPIS EVDNNLNLSD KVNASVPSSG AIVLEVKKVE 900 EQRRKWDRLQ AFDAWIWNSF YCNLNAVKHS KRSYVDTLVR CASCHDLYWR DEKHCKICHA 960 TFELDFDLEE RYAVHVATCR EKEDNKFPKH KVLPTQLQSL KAALHAIEGV MPKEALVSAW 1020 TMSDHKLWIR RLRRTTSLLE LLQVLTDFVG ALNENWLSQC SIDSDCHTAV DEIIESFPTI 1080 PQTISAVALW LVKLDASFAP HLKGAHCEQT HGRTRNKKGS *

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence Send to blast

MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL  60
TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV  120
DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGQRNGP TCAQNQRMAK KRKVSKSPIS  180
QLEVNTKKSV SGNKHGMGKG LMTVWRATNA GARGYPMGVN TTDKYITDVY FNSASANSRK  240
PLQHEMRKKE SHKLTKKQGR AGNKLLERRK RAIVSSSKAD NPKKPHHAEC KLALEGLRSQ  300
EYRNGTTKLV DDEELELREL QAGPNPLTCS AHLASNTLHT CSLCKDLLAR FPPQSVMMKQ  360
PLCVQPWGSL PELVKKLFKD SLLLGRIHAT LLKLLFSDVG MAVNSGFHSH ASKDYRFLGF  420
LQTVKEQEFI LKLWNRCLNP ITWPEILRQV LIAAGFNSKQ RDFRRIPSIK DDNLLAGYGL  480
RPGTLKGEMF SILSEQGNNG LKVLELAKDF RVVKLHLTNS AKELELLIRS TLSSDITLFE  540
KISPSTYRLR SNLLNCIGAG DCQSDSEDSG SIDGASEESI TNSCDESELD SSKTSLALVK  600
HKKHSTKKSD TLIEYNEIDE MDSGEQWLLA LMESEYSELS IEEKMNTLVA LVDLTSAGSS  660
TRVEARESVT AENLASIQHH GGAKIKRSVA KQNNLVKPFW SNSESMDVVK EMDAPPGKHS  720
VKWNGLKKND SRVPDASKTN ATESIDEAGL DRHPLQSIYL GSDRRFNSYW LFLGPCNAKD  780
PGHRRIYFES SEDGHWEVID TKEALYSLLS VLDGRGSREA YLLAALMRLE GFLCEAMCNN  840
ITSDNDMRHS TQSDRSSLGI ISSDGSSPIS EVDNNLNLSD KVNASVPSSG AIVLEVKKVE  900
EQRRKWDRLQ AFDAWIWNSF YCNLNAVKHS KRSYVDTLVR CASCHDLYWR DEKHCKICHA  960
TFELDFDLEE RYAVHVATCR EKEDNKFPKH KVLPTQLQSL KAALHAIEGV MPKEALVSAW  1020
TMSDHKLWIR RLRRTTSLLE LLQVLTDFVG ALNENWLSQC SIDSDCHTAV DEIIESFPTI  1080
PQTISAVALW LVKLDASFAP HLKGAHCEQT HGRTRNKKGS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	76	RRRKEK
2	71	78	RRRKEKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274899.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_010274900.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A2G5CC21	0.0	A0A2G5CC21_AQUCA; Uncharacterized protein
STRING	Aquca_066_00010.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Aqcoe1G292900.5.p