PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G292900.4.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HB-other

Protein Properties

Length: 1077aa MW: 121007 Da PI: 8.4957

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G292900.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.8	4.4e-14	30	78	9	57
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ql++Le l+ +++yps++e e+ A +l+Lt +qV+ WF rR kek+ Aqcoe1G292900.4.p 30 LLQLQTLEHLYSEDKYPSHKELEDFALSLNLTYKQVRGWFVERRRKEKR 78 569*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.2E-11	22	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.14E-13	23	79	IPR009057	Homeodomain-like
CDD	cd00086	1.65E-11	27	79	No hit	No description
Pfam	PF00046	1.3E-11	30	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-13	31	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	32	79	IPR001356	Homeobox domain
Pfam	PF15612	6.7E-6	579	620	IPR028942	WHIM1 domain
Pfam	PF15613	5.8E-10	713	784	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1077 aa Download sequence Send to blast
MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL 60 TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV 120 DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGQRNGP TCAQNQRMAK KRKVSKSPIS 180 QLEVNTKKSV SGNKHGMGKG LMTVWRATNA GARGYPMGVN TTDKYITDVY FNSASANSRK 240 PLQHEMRKKE SHKLTKKQGR AGNKLLERRK RAIVSSSKAD NPKKPHHAEC KLALEGLRSQ 300 EYRNGTTKLV DDEELELREL QAGPNPLTCS AHLASNTLHT CSLCKDLLAR FPPQSVMMKQ 360 PLCVQPWGSL PELVKKLFKV KEQEFILKLW NRCLNPITWP EILRQVLIAA GFNSKQRDFR 420 RIPSIKDDNL LAGYGLRPGT LKGEMFSILS EQGNNGLKVL ELAKDFRVVK LHLTNSAKEL 480 ELLIRSTLSS DITLFEKISP STYRLRSNLL NCIGAGDCQS DSEDSGSIDG ASEESITNSC 540 DESELDSSKT SLALVKHKKH STKKSDTLIE YNEIDEMDSG EQWLLALMES EYSELSIEEK 600 MNTLVALVDL TSAGSSTRVE ARESVTAENL ASIQHHGGAK IKRSVAKQNN LVKPFWSNSE 660 SMDVVKEMDA PPGKHSVKWN GLKKNDSRVP DASKTNATES IDEAGLDRHP LQSIYLGSDR 720 RFNSYWLFLG PCNAKDPGHR RIYFESSEDG HWEVIDTKEA LYSLLSVLDG RGSREAYLLA 780 ALMRLEGFLC EAMCNNITSD NDMRHSTQSD RSSLGIISSD GSSPISEVDN NLNLSDKVNA 840 SVPSSGAIVL EVKKVEEQRR KWDRLQAFDA WIWNSFYCNL NAVKHSKRSY VDTLVRCASC 900 HDLYWRDEKH CKICHATFEL DFDLEERYAV HVATCREKED NKFPKHKVLP TQLQSLKAAL 960 HAIEGVMPKE ALVSAWTMSD HKLWIRRLRR TTSLLELLQV LTDFVGALNE NWLSQCSIDS 1020 DCHTAVDEII ESFPTIPQTI SAVALWLVKL DASFAPHLKG AHCEQTHGRT RNKKGS*

Sequence ? help Back to Top

Protein Sequence Length: 1077 aa Download sequence Send to blast

MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL  60
TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV  120
DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGQRNGP TCAQNQRMAK KRKVSKSPIS  180
QLEVNTKKSV SGNKHGMGKG LMTVWRATNA GARGYPMGVN TTDKYITDVY FNSASANSRK  240
PLQHEMRKKE SHKLTKKQGR AGNKLLERRK RAIVSSSKAD NPKKPHHAEC KLALEGLRSQ  300
EYRNGTTKLV DDEELELREL QAGPNPLTCS AHLASNTLHT CSLCKDLLAR FPPQSVMMKQ  360
PLCVQPWGSL PELVKKLFKV KEQEFILKLW NRCLNPITWP EILRQVLIAA GFNSKQRDFR  420
RIPSIKDDNL LAGYGLRPGT LKGEMFSILS EQGNNGLKVL ELAKDFRVVK LHLTNSAKEL  480
ELLIRSTLSS DITLFEKISP STYRLRSNLL NCIGAGDCQS DSEDSGSIDG ASEESITNSC  540
DESELDSSKT SLALVKHKKH STKKSDTLIE YNEIDEMDSG EQWLLALMES EYSELSIEEK  600
MNTLVALVDL TSAGSSTRVE ARESVTAENL ASIQHHGGAK IKRSVAKQNN LVKPFWSNSE  660
SMDVVKEMDA PPGKHSVKWN GLKKNDSRVP DASKTNATES IDEAGLDRHP LQSIYLGSDR  720
RFNSYWLFLG PCNAKDPGHR RIYFESSEDG HWEVIDTKEA LYSLLSVLDG RGSREAYLLA  780
ALMRLEGFLC EAMCNNITSD NDMRHSTQSD RSSLGIISSD GSSPISEVDN NLNLSDKVNA  840
SVPSSGAIVL EVKKVEEQRR KWDRLQAFDA WIWNSFYCNL NAVKHSKRSY VDTLVRCASC  900
HDLYWRDEKH CKICHATFEL DFDLEERYAV HVATCREKED NKFPKHKVLP TQLQSLKAAL  960
HAIEGVMPKE ALVSAWTMSD HKLWIRRLRR TTSLLELLQV LTDFVGALNE NWLSQCSIDS  1020
DCHTAVDEII ESFPTIPQTI SAVALWLVKL DASFAPHLKG AHCEQTHGRT RNKKGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	76	RRRKEK
2	71	78	RRRKEKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022771610.1	0.0	homeobox-DDT domain protein RLT3-like isoform X3
TrEMBL	A0A2G5CC21	0.0	A0A2G5CC21_AQUCA; Uncharacterized protein
STRING	Aquca_066_00010.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Aqcoe1G292900.4.p