PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G292900.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HB-other

Protein Properties

Length: 1150aa MW: 129279 Da PI: 8.3322

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G292900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.7	4.7e-14	30	78	9	57
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ql++Le l+ +++yps++e e+ A +l+Lt +qV+ WF rR kek+ Aqcoe1G292900.3.p 30 LLQLQTLEHLYSEDKYPSHKELEDFALSLNLTYKQVRGWFVERRRKEKR 78 569*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.2E-11	22	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.35E-13	23	79	IPR009057	Homeodomain-like
CDD	cd00086	1.26E-11	27	79	No hit	No description
Pfam	PF00046	1.4E-11	30	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-13	31	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	32	79	IPR001356	Homeobox domain
PROSITE profile	PS50827	12.22	371	430	IPR018501	DDT domain
SMART	SM00571	9.1E-12	371	430	IPR018501	DDT domain
Pfam	PF02791	5.0E-8	373	427	IPR018501	DDT domain
Pfam	PF15612	7.3E-6	652	693	IPR028942	WHIM1 domain
Pfam	PF15613	6.2E-10	786	857	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence Send to blast
MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL 60 TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV 120 DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGQRNGP TCAQNQRMAK KRKVSKSPIS 180 QLEVNTKKSV SGNKHGMGKG LMTVWRATNA GARGYPMGVN TTDKYITDVY FNSASANSRK 240 PLQHEMRKKE SHKLTKKQGR AGNKLLERRK RAIVSSSKAD NPKKPHHAEC KLALEGLRSQ 300 EYRNGTTKLV DDEELELREL QAGPNPLTCS AHLASNTLHT CSLCKDLLAR FPPQSVMMKQ 360 PLCVQPWGSL PELVKKLFKV FRFLYSCSDT LDICPFTLDE FAQAFHDKDS LLLGRIHATL 420 LKLLFSDVGM AVNSGFHSHA SKDYRFLGFL QTVKEQEFIL KLWNRCLNPI TWPEILRQVL 480 IAAGFNSKQR DFRRIPSIKD DNLLAGYGLR PGTLKGEMFS ILSEQGNNGL KVLELAKDFR 540 VVKLHLTNSA KELELLIRST LSSDITLFEK ISPSTYRLRS NLLNCIGAGD CQSDSEDSGS 600 IDGASEESIT NSCDESELDS SKTSLALVKH KKHSTKKSDT LIEYNEIDEM DSGEQWLLAL 660 MESEYSELSI EEKMNTLVAL VDLTSAGSST RVEARESVTA ENLASIQHHG GAKIKRSVAK 720 QNNLVKPFWS NSESMDVVKE MDAPPGKHSV KWNGLKKNDS RVPDASKTNA TESIDEAGLD 780 RHPLQSIYLG SDRRFNSYWL FLGPCNAKDP GHRRIYFESS EDGHWEVIDT KEALYSLLSV 840 LDGRGSREAY LLAALMRLEG FLCEAMCNNI TSDNDMRHST QSDRSSLGII SSDGSSPISE 900 VDNNLNLSDK VNASVPSSGA IVLEVKKVEE QRRKWDRLQA FDAWIWNSFY CNLNAVKHSK 960 RSYVDTLVRC ASCHDLYWRD EKHCKICHAT FELDFDLEER YAVHVATCRE KEDNKFPKHK 1020 VLPTQLQSLK AALHAIEGVM PKEALVSAWT MSDHKLWIRR LRRTTSLLEL LQVLTDFVGA 1080 LNENWLSQCS IDSDCHTAVD EIIESFPTIP QTISAVALWL VKLDASFAPH LKGAHCEQTH 1140 GRTRNKKGS*

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence Send to blast

MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL  60
TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV  120
DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGQRNGP TCAQNQRMAK KRKVSKSPIS  180
QLEVNTKKSV SGNKHGMGKG LMTVWRATNA GARGYPMGVN TTDKYITDVY FNSASANSRK  240
PLQHEMRKKE SHKLTKKQGR AGNKLLERRK RAIVSSSKAD NPKKPHHAEC KLALEGLRSQ  300
EYRNGTTKLV DDEELELREL QAGPNPLTCS AHLASNTLHT CSLCKDLLAR FPPQSVMMKQ  360
PLCVQPWGSL PELVKKLFKV FRFLYSCSDT LDICPFTLDE FAQAFHDKDS LLLGRIHATL  420
LKLLFSDVGM AVNSGFHSHA SKDYRFLGFL QTVKEQEFIL KLWNRCLNPI TWPEILRQVL  480
IAAGFNSKQR DFRRIPSIKD DNLLAGYGLR PGTLKGEMFS ILSEQGNNGL KVLELAKDFR  540
VVKLHLTNSA KELELLIRST LSSDITLFEK ISPSTYRLRS NLLNCIGAGD CQSDSEDSGS  600
IDGASEESIT NSCDESELDS SKTSLALVKH KKHSTKKSDT LIEYNEIDEM DSGEQWLLAL  660
MESEYSELSI EEKMNTLVAL VDLTSAGSST RVEARESVTA ENLASIQHHG GAKIKRSVAK  720
QNNLVKPFWS NSESMDVVKE MDAPPGKHSV KWNGLKKNDS RVPDASKTNA TESIDEAGLD  780
RHPLQSIYLG SDRRFNSYWL FLGPCNAKDP GHRRIYFESS EDGHWEVIDT KEALYSLLSV  840
LDGRGSREAY LLAALMRLEG FLCEAMCNNI TSDNDMRHST QSDRSSLGII SSDGSSPISE  900
VDNNLNLSDK VNASVPSSGA IVLEVKKVEE QRRKWDRLQA FDAWIWNSFY CNLNAVKHSK  960
RSYVDTLVRC ASCHDLYWRD EKHCKICHAT FELDFDLEER YAVHVATCRE KEDNKFPKHK  1020
VLPTQLQSLK AALHAIEGVM PKEALVSAWT MSDHKLWIRR LRRTTSLLEL LQVLTDFVGA  1080
LNENWLSQCS IDSDCHTAVD EIIESFPTIP QTISAVALWL VKLDASFAPH LKGAHCEQTH  1140
GRTRNKKGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	76	RRRKEK
2	71	78	RRRKEKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274899.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_010274900.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A2G5CC21	0.0	A0A2G5CC21_AQUCA; Uncharacterized protein
STRING	Aquca_066_00010.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Aqcoe1G292900.3.p