PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G292900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HB-other | ||||||||
Protein Properties | Length: 1043aa MW: 117186 Da PI: 8.4035 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.8 | 4.2e-14 | 30 | 78 | 9 | 57 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ql++Le l+ +++yps++e e+ A +l+Lt +qV+ WF rR kek+ Aqcoe1G292900.2.p 30 LLQLQTLEHLYSEDKYPSHKELEDFALSLNLTYKQVRGWFVERRRKEKR 78 569*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.2E-11 | 22 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-13 | 23 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.07E-11 | 27 | 79 | No hit | No description |
Pfam | PF00046 | 1.3E-11 | 30 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-13 | 31 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.058 | 32 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 12.22 | 371 | 430 | IPR018501 | DDT domain |
SMART | SM00571 | 9.1E-12 | 371 | 430 | IPR018501 | DDT domain |
Pfam | PF02791 | 4.5E-8 | 373 | 427 | IPR018501 | DDT domain |
Pfam | PF15612 | 6.5E-6 | 652 | 693 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 5.5E-10 | 786 | 857 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1043 aa Download sequence Send to blast |
MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL 60 TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV 120 DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGQRNGP TCAQNQRMAK KRKVSKSPIS 180 QLEVNTKKSV SGNKHGMGKG LMTVWRATNA GARGYPMGVN TTDKYITDVY FNSASANSRK 240 PLQHEMRKKE SHKLTKKQGR AGNKLLERRK RAIVSSSKAD NPKKPHHAEC KLALEGLRSQ 300 EYRNGTTKLV DDEELELREL QAGPNPLTCS AHLASNTLHT CSLCKDLLAR FPPQSVMMKQ 360 PLCVQPWGSL PELVKKLFKV FRFLYSCSDT LDICPFTLDE FAQAFHDKDS LLLGRIHATL 420 LKLLFSDVGM AVNSGFHSHA SKDYRFLGFL QTVKEQEFIL KLWNRCLNPI TWPEILRQVL 480 IAAGFNSKQR DFRRIPSIKD DNLLAGYGLR PGTLKGEMFS ILSEQGNNGL KVLELAKDFR 540 VVKLHLTNSA KELELLIRST LSSDITLFEK ISPSTYRLRS NLLNCIGAGD CQSDSEDSGS 600 IDGASEESIT NSCDESELDS SKTSLALVKH KKHSTKKSDT LIEYNEIDEM DSGEQWLLAL 660 MESEYSELSI EEKMNTLVAL VDLTSAGSST RVEARESVTA ENLASIQHHG GAKIKRSVAK 720 QNNLVKPFWS NSESMDVVKE MDAPPGKHSV KWNGLKKNDS RVPDASKTNA TESIDEAGLD 780 RHPLQSIYLG SDRRFNSYWL FLGPCNAKDP GHRRIYFESS EDGHWEVIDT KEALYSLLSV 840 LDGRGSREAY LLAALMRLEG FLCEAMCNNI TSDNDMRHST QSDRSSLGII SSDGSSPISE 900 VDNNLNLSDK VNASVPSSGA IVLEVKKVEE QRRKWDRLQA FDAWIWNSFY CNLNAVKHSK 960 RSYVDTLVRC ASCHDLYWRD EKHCKICHAT FELDFDLEER YAVHVATCRE KEDNKFPKHK 1020 VLPTQLQSLK AALHAIEVGS NA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 76 | RRRKEK |
2 | 71 | 78 | RRRKEKRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010274899.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT3 isoform X1 | ||||
Refseq | XP_010274900.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT3 isoform X1 | ||||
TrEMBL | A0A2G5CC21 | 0.0 | A0A2G5CC21_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_066_00010.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G292900.2.p |