PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G292900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HB-other | ||||||||
Protein Properties | Length: 1161aa MW: 130518 Da PI: 8.4941 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.7 | 4.8e-14 | 30 | 78 | 9 | 57 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ql++Le l+ +++yps++e e+ A +l+Lt +qV+ WF rR kek+ Aqcoe1G292900.1.p 30 LLQLQTLEHLYSEDKYPSHKELEDFALSLNLTYKQVRGWFVERRRKEKR 78 569*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.2E-11 | 22 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.35E-13 | 23 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.47E-11 | 27 | 79 | No hit | No description |
Pfam | PF00046 | 1.4E-11 | 30 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-13 | 31 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.058 | 32 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 12.22 | 382 | 441 | IPR018501 | DDT domain |
SMART | SM00571 | 9.1E-12 | 382 | 441 | IPR018501 | DDT domain |
Pfam | PF02791 | 5.1E-8 | 384 | 438 | IPR018501 | DDT domain |
Pfam | PF15612 | 7.3E-6 | 663 | 704 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 6.3E-10 | 797 | 868 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1161 aa Download sequence Send to blast |
MGNSDEDGGG VGVCKMVFNN HGSITKRKTL LQLQTLEHLY SEDKYPSHKE LEDFALSLNL 60 TYKQVRGWFV ERRRKEKRET IETPTSPPIC YTNHLYHHSN PLPGSILQTN NQKQTMMHSV 120 DYILKKIFRK DGPPLGVTFD PLPLGAFHST TTTTGRRKKD LNSLAGQRNG PTCAQNQRMA 180 KKRKVSKSPI SQLEVNTKKS VSGNKHGMGK GLMTVWRATN AGARGYPMGV NTTDKYITDV 240 YFNSASANSR KPLQHEMRKK ESHKLTKKQG RAGNKLLERR KRAIVSSSKA DNPKKPHHAE 300 CKLALEGLRS QEYRNGTTKL VDDEELELRE LQAGPNPLTC SAHLASNTLH TCSLCKDLLA 360 RFPPQSVMMK QPLCVQPWGS LPELVKKLFK VFRFLYSCSD TLDICPFTLD EFAQAFHDKD 420 SLLLGRIHAT LLKLLFSDVG MAVNSGFHSH ASKDYRFLGF LQTVKEQEFI LKLWNRCLNP 480 ITWPEILRQV LIAAGFNSKQ RDFRRIPSIK DDNLLAGYGL RPGTLKGEMF SILSEQGNNG 540 LKVLELAKDF RVVKLHLTNS AKELELLIRS TLSSDITLFE KISPSTYRLR SNLLNCIGAG 600 DCQSDSEDSG SIDGASEESI TNSCDESELD SSKTSLALVK HKKHSTKKSD TLIEYNEIDE 660 MDSGEQWLLA LMESEYSELS IEEKMNTLVA LVDLTSAGSS TRVEARESVT AENLASIQHH 720 GGAKIKRSVA KQNNLVKPFW SNSESMDVVK EMDAPPGKHS VKWNGLKKND SRVPDASKTN 780 ATESIDEAGL DRHPLQSIYL GSDRRFNSYW LFLGPCNAKD PGHRRIYFES SEDGHWEVID 840 TKEALYSLLS VLDGRGSREA YLLAALMRLE GFLCEAMCNN ITSDNDMRHS TQSDRSSLGI 900 ISSDGSSPIS EVDNNLNLSD KVNASVPSSG AIVLEVKKVE EQRRKWDRLQ AFDAWIWNSF 960 YCNLNAVKHS KRSYVDTLVR CASCHDLYWR DEKHCKICHA TFELDFDLEE RYAVHVATCR 1020 EKEDNKFPKH KVLPTQLQSL KAALHAIEGV MPKEALVSAW TMSDHKLWIR RLRRTTSLLE 1080 LLQVLTDFVG ALNENWLSQC SIDSDCHTAV DEIIESFPTI PQTISAVALW LVKLDASFAP 1140 HLKGAHCEQT HGRTRNKKGS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 76 | RRRKEK |
2 | 71 | 78 | RRRKEKRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010274899.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT3 isoform X1 | ||||
Refseq | XP_010274900.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT3 isoform X1 | ||||
TrEMBL | A0A2G5CC21 | 0.0 | A0A2G5CC21_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_066_00010.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G292900.1.p |