PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G270600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HSF | ||||||||
Protein Properties | Length: 194aa MW: 22729.8 Da PI: 8.2143 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.3 | 2.8e-34 | 27 | 119 | 2 | 102 |
HHHHHHHHHCT.GGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiled.eelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F+ klyeile+ ++ ++++sw+++g+ fvv+ ++ef++ +Lp+yFkh+nf+SF+RQLn+YgFkk +++ weF+h +F++g+++ Aqcoe1G270600.1.p 27 FILKLYEILEEgHDRNQIVSWNKEGTGFVVWSPDEFSELLLPRYFKHNNFSSFIRQLNTYGFKKCATNR---------WEFQHCKFQNGNRH 109 9********96257889************************************************9998.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i rkk Aqcoe1G270600.1.p 110 LLQEITRKKC 119 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.3E-34 | 18 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.9E-41 | 23 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.22E-28 | 24 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.8E-30 | 27 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-12 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-12 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-12 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MARETSELNW SILDSRANQS MRCPAPFILK LYEILEEGHD RNQIVSWNKE GTGFVVWSPD 60 EFSELLLPRY FKHNNFSSFI RQLNTYGFKK CATNRWEFQH CKFQNGNRHL LQEITRKKCE 120 PSVFPAFLKA SSSEPVGGVV DESSDLLLQE NENLRKEKLE LQMQIHQYKS LQMKLSDSLS 180 QYLVNQNQFR RTC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdk_A | 3e-19 | 23 | 117 | 7 | 110 | Heat shock factor protein 2 |
5hdk_B | 3e-19 | 23 | 117 | 7 | 110 | Heat shock factor protein 2 |
5hdk_C | 3e-19 | 23 | 117 | 7 | 110 | Heat shock factor protein 2 |
5hdk_D | 3e-19 | 23 | 117 | 7 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506614.1 | 3e-76 | heat stress transcription factor B-2a | ||||
TrEMBL | A0A2G5C6U6 | 1e-126 | A0A2G5C6U6_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_084_00048.1 | 1e-127 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-35 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G270600.1.p |