PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G267200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LSD
Protein Properties Length: 350aa    MW: 37998.3 Da    PI: 8.127
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G267200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.33.3e-10261285125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg Cr lLsYP GA +++Ca C tV
  Aqcoe1G267200.1.p 261 CGVCRSLLSYPNGAIHIKCAGCRTV 285
                        ************************9 PP
2zf-LSD133.57.1e-11299323125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+C +lL+Y +G+psV+C++C +V
  Aqcoe1G267200.1.p 299 CGSCFVLLMYKLGSPSVKCSCCRFV 323
                        **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.5E-13258288IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-8261285IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-8296324IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-9299323IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MHPKTRLKED KFFKFKIINY KTEVLKTTNK QLFRQPISSI QRPLSSIQNQ CSILNKHTLK  60
LKPRQIIFFV QKMEMDMVME MELDPPELDS TTAATTTTTT TTTASPSSQC HPLSPGPPGW  120
KSIKASTTQE APPPGWEPTN SEPCKESESP PPPPGWETTT TTTTTTASSP PPPPGWGPTK  180
ESSPPPPGWE TTTTTTTNES SPPPPPPGWG PTYTTSQPAI ESPLQVPPQQ ESKSPSQCPQ  240
QSPHQLEPST SPTSELGQLI CGVCRSLLSY PNGAIHIKCA GCRTVNHVLQ AHQVGLVKCG  300
SCFVLLMYKL GSPSVKCSCC RFVTEIGVDN KRPLFPVAQD HSSSPHIVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5C6S40.0A0A2G5C6S4_AQUCA; Uncharacterized protein
STRINGAquca_084_00020.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.17e-27lsd one like 2