PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G258100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Dof

Protein Properties

Length: 354aa MW: 38949.5 Da PI: 9.375

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G258100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.6	2.4e-37	51	110	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ +kcprCds ntkfCyynnys sqPr+fCk+CrryWt+GG+lrnvPvGgg+rk k+ Aqcoe1G258100.1.p 51 PQQPQKCPRCDSLNTKFCYYNNYSQSQPRFFCKTCRRYWTQGGTLRNVPVGGGCRKGKRL 110 67899***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-32	53	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	55	109	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-18	56	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEQDRKGGGG RRGVDEMREI QQQHQQQQQK DHQRGGTKQQ NQENNQHHPP PQQPQKCPRC 60 DSLNTKFCYY NNYSQSQPRF FCKTCRRYWT QGGTLRNVPV GGGCRKGKRL KRSSSSPENL 120 NSSTSHSNSI LSIPSVAPPL RNKGIDGILP SSSPLLPIAA TAVPPSMYYP GGGFFSSLAG 180 FPSFNHQPPI NVGGEFGSSN LALLQGFSLP FHTQQQMHHQ QQLHHQQQQQ QQHQQQQLYL 240 HQPHNFNLGL SSDDGLEEKV VVQPNKPSTS HQEWSQSFNP ATNNSSSNSE AAAAGYWSSS 300 NNNNNTNTST INTSTTSTSV SLNPTHWTDH LSGYGPPPPP PTSTTSSSSP SFL*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEQDRKGGGG RRGVDEMREI QQQHQQQQQK DHQRGGTKQQ NQENNQHHPP PQQPQKCPRC  60
DSLNTKFCYY NNYSQSQPRF FCKTCRRYWT QGGTLRNVPV GGGCRKGKRL KRSSSSPENL  120
NSSTSHSNSI LSIPSVAPPL RNKGIDGILP SSSPLLPIAA TAVPPSMYYP GGGFFSSLAG  180
FPSFNHQPPI NVGGEFGSSN LALLQGFSLP FHTQQQMHHQ QQLHHQQQQQ QQHQQQQLYL  240
HQPHNFNLGL SSDDGLEEKV VVQPNKPSTS HQEWSQSFNP ATNNSSSNSE AAAAGYWSSS  300
NNNNNTNTST INTSTTSTSV SLNPTHWTDH LSGYGPPPPP PTSTTSSSSP SFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260261.1	8e-62	PREDICTED: dof zinc finger protein DOF5.4-like
Refseq	XP_010260262.1	8e-62	PREDICTED: dof zinc finger protein DOF5.4-like
Refseq	XP_010260263.1	8e-62	PREDICTED: dof zinc finger protein DOF5.4-like
Refseq	XP_010260264.1	8e-62	PREDICTED: dof zinc finger protein DOF5.4-like
Refseq	XP_010260265.1	8e-62	PREDICTED: dof zinc finger protein DOF5.4-like
Refseq	XP_010260266.1	8e-62	PREDICTED: dof zinc finger protein DOF5.4-like
Refseq	XP_010260267.1	8e-62	PREDICTED: dof zinc finger protein DOF5.4-like
Refseq	XP_010260268.1	8e-62	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A2G5CVC4	0.0	A0A2G5CVC4_AQUCA; Uncharacterized protein
STRING	Aquca_036_00100.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-23	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Aqcoe1G258100.1.p