PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe1G258000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 185aa MW: 21729.5 Da PI: 9.8536 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 122.4 | 2e-38 | 79 | 155 | 1 | 76 |
--SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cq+++C++dl + k yh +h+vCe+hskapvv+vsg+++rfCqqCsrfhelsefD+ krsCr+rLa+hnerrrk+ Aqcoe1G258000.1.p 79 ICQADNCNVDLIKQdKMYHFKHRVCEFHSKAPVVIVSGVSKRFCQQCSRFHELSEFDDVKRSCRKRLAGHNERRRKA 155 5*********9765499**********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-28 | 75 | 142 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.658 | 77 | 155 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.12E-34 | 79 | 155 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.1E-29 | 80 | 154 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
METNNLVRIE QEKQNLNKTP NKRLQLVHYE SDTEEEEEEA QNLFKYEHNN NNNNKRKLAS 60 TSSFNKKGPT FEKNSPEFIC QADNCNVDLI KQDKMYHFKH RVCEFHSKAP VVIVSGVSKR 120 FCQQCSRFHE LSEFDDVKRS CRKRLAGHNE RRRKALRLQL MKNHCRKSGE SKSSKKLQQT 180 DLSI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-31 | 79 | 154 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303145.1 | 1e-36 | PREDICTED: squamosa promoter-binding protein 1-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33810.1 | 9e-35 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe1G258000.1.p |