PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G240000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | TCP | ||||||||
Protein Properties | Length: 396aa MW: 42707.6 Da PI: 6.8804 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.3 | 9.3e-37 | 39 | 146 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec.eaesssssasn 84 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + + +a++ss+++++ Aqcoe1G240000.1.p 39 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwrptatN------TsNAGQSSEQGQE 124 79**************************************************************887665431......1122222222222 PP TCP 85 sssg.................k 89 ++++ + Aqcoe1G240000.1.p 125 EENQnqvdafgssskrpmeveQ 146 2222233344333333332220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-32 | 39 | 145 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 41 | 99 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MEDTQHPQQQ TTSRLGLLKS SVGGGEIVEV QGGHIVRSTG RKDRHSKVCT AKGPRDRRVR 60 LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK KAKAAIDELA ELPPWRPTAT NTSNAGQSSE 120 QGQEEENQNQ VDAFGSSSKR PMEVEQDASG YGFQQQHLNN NPSSSSGFLP PSLDSDAIAD 180 TIKSFFPIAA ATSSSSIHFQ NYPPDLLSRT SSHTQDLRLS LQSFHDPMLL HHQSHHHSNP 240 TPSAQQTLFS SSSPLPFDAS ASWSDQQHPE MGRFQRMIAW NAGTDTGSGD AGGGGGGGGG 300 FVFNSPQPPQ SFLSQNPFLQ QRGPLQSSNS PQFRAWTDPS ITGANHNQMQ SVNQSSISGI 360 GFASGGFSGF RIPARIQGEE EHDAASNKPP SASRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 46 | 99 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 46 | 99 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP331537 | 0.0 | KP331537.1 Aquilegia coerulea TCP4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010277724.1 | 1e-166 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-107 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2G5EQD9 | 0.0 | A0A2G5EQD9_AQUCA; TCP4 | ||||
STRING | Aquca_005_00099.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-76 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G240000.1.p |