PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G227500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Dof
Protein Properties Length: 156aa    MW: 17486 Da    PI: 9.1666
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G227500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.57.9e-4042101261
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                        ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk s
  Aqcoe1G227500.1.p  42 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGTLRNVPVGAGRRKNKPS 101
                        68999****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-294199IPR003851Zinc finger, Dof-type
PfamPF027012.5E-324499IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.40746100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1902455Biological Processnegative regulation of stem cell population maintenance
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEEAKTSQEA SGFKLFGTTI QLEIKKVKDE MVKEAEIAAK RPDKIIPCPR CKSMETKFCY  60
FNNYNVNQPR HFCKGCQRYW TAGGTLRNVP VGAGRRKNKP SMGFSSDCMF DASEVREFNF  120
DPVVEQWQIT PTSSGGLRHA FPAKRQCTTS AGQIC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277029.14e-65PREDICTED: dof zinc finger protein DOF1.5
SwissprotO229673e-52CDF4_ARATH; Cyclic dof factor 4
TrEMBLA0A2G5DFB41e-113A0A2G5DFB4_AQUCA; Uncharacterized protein
STRINGAquca_021_00236.11e-114(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34140.11e-54Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Bueso E, et al.
    Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration.
    Plant J., 2016. 87(6): p. 583-96
    [PMID:27227784]