PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe1G209900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26003.7 Da PI: 9.4894 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.9 | 8.7e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fs++g+lyey+ Aqcoe1G209900.2.p 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSNRGRLYEYA 58 79***********************************************8 PP | |||||||
2 | K-box | 106.8 | 2.6e-35 | 80 | 172 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ea+ +qqe++k+k++ie Lq+++Rhl+Ge L+ Ls+keL+qLe++Lek++++iRskKne+ll++ie +qk+e el+++n +Lr+++ Aqcoe1G209900.2.p 80 LTVSEANLLFYQQESSKMKQQIEILQNSNRHLMGEALSCLSIKELKQLESRLEKGISRIRSKKNEMLLAEIEFMQKREIELHNDNIYLREQI 171 448999999*********************************************************************************98 PP K-box 99 e 99 Aqcoe1G209900.2.p 172 T 172 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.599 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-33 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.35E-43 | 2 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.687 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.9E-26 | 89 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCE AEVALIVFSN RGRLYEYANN 60 SVRKTIDRYK KTCGEGSSAL TVSEANLLFY QQESSKMKQQ IEILQNSNRH LMGEALSCLS 120 IKELKQLESR LEKGISRIRS KKNEMLLAEI EFMQKREIEL HNDNIYLREQ ITANERAQQH 180 MNSLPGNVYE AITSAPYNSR DFLQVNLRES KPNQYCDSTA LQLW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY464110 | 0.0 | AY464110.1 Aquilegia alpina AGAMOUS-like protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_026392031.1 | 1e-119 | floral homeotic protein AGAMOUS-like isoform X2 | ||||
Refseq | XP_026412851.1 | 1e-119 | floral homeotic protein AGAMOUS-like isoform X2 | ||||
Refseq | XP_026412871.1 | 1e-119 | floral homeotic protein AGAMOUS-like isoform X5 | ||||
Swissprot | Q93XH4 | 1e-112 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A2G5DCU1 | 1e-161 | A0A2G5DCU1_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_022_00039.1 | 1e-162 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42830.1 | 2e-99 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe1G209900.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|