PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G185500.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 739aa    MW: 82219.6 Da    PI: 6.6157
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G185500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-2431131198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Aqcoe1G185500.2.p  31 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGTEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI-- 118
                        99*****************************8544444..48************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        ++++ +l+++++ 
  Aqcoe1G185500.2.p 119 WNEKNQLHLGIRH 131
                        8889999999986 PP
2Auxin_resp114.78.3e-38157239182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        aahaa+t+s F+++YnPra++seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+W s+
  Aqcoe1G185500.2.p 157 AAHAAATNSRFTIFYNPRATPSEFVIPLTKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSNWCSV 239
                        79*********************************9789*****************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-4916160IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-4324146IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-2230130No hitNo description
PfamPF023621.7E-2231132IPR003340B3 DNA binding domain
PROSITE profilePS5086312.85831133IPR003340B3 DNA binding domain
SMARTSM010197.3E-2531133IPR003340B3 DNA binding domain
PfamPF065075.9E-33157239IPR010525Auxin response factor
PfamPF023098.1E-8594692IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-7603682No hitNo description
PROSITE profilePS5174523.973607691IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MTLQPLSQQE QKDVYLPAEL GVPSKQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL  60
DFSQQPPAQE LIARDLHGTE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN  120
EKNQLHLGIR HANRPQTMMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRATPSEF  180
VIPLTKYAKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGISDLDPVR WPNSNWCSVK  240
VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SQFSLGLKRP WPPGLPSLHG GKGDDLSINS  300
PLMWLQGGGA NRGIESLNFQ GVGVNPWVQT RLDASLLGLQ SDMYHSMAAS ALQEMRTMGS  360
SQQAPPSLPQ VQLSPNLPGS ALMMRQMVQQ SQPQSAFLQN IHENQSHNLG YGQAPFHLLQ  420
TQLQEQKPQQ QQELPSQQQI PDIVSALAHY ASASQSQSPM QNLSSLCQKQ SFPESNANLV  480
ASTGVSPLYN SLGSISQEET TNLLDLPRSN AVISSDGWLP RQVGFESLLP SGVNQYLMPQ  540
VEQFGQQQTN ISPQNVPLSP LPQREYSEDQ EGTNFPLHSN MATSSCLDES SFLQSPENEG  600
QVNQPIRTFV KVYKSGSFGR SLDITKFSGY QELRSELECM FGLTGQLEDP LRSGWQLVFV  660
DRENDVLLLG DDPWQEFVNS VWCIKILSPQ EVQKMGKQGL ELLNPRQRLS GGSYNSYVNC  720
EDSRNLSPRS TSVSSLNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1141261128388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595219.10.0auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G5DDT00.0A0A2G5DDT0_AQUCA; Auxin response factor
STRINGAquca_022_00246.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]