PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G182300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LSD
Protein Properties Length: 178aa    MW: 18736.8 Da    PI: 8.437
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G182300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD135.61.6e-11731125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCr +L YPrGA +V+Ca+C t+
  Aqcoe1G182300.3.p  7 CSGCRSVLLYPRGAANVCCAICSTI 31
                       **********************997 PP
2zf-LSD146.56.1e-154670125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggCrtlL+Y rGA+sVRC++C+t+
  Aqcoe1G182300.3.p 46 CGGCRTLLMYSRGATSVRCSCCHTI 70
                       ***********************97 PP
3zf-LSD146.17.7e-1585108124
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                        Cg+C t+L+YP+GApsV+Ca+C+ 
  Aqcoe1G182300.3.p  85 CGQCNTTLMYPYGAPSVKCAVCNY 108
                        **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-11434IPR005735Zinc finger, LSD1-type
PfamPF069433.7E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.9E-174372IPR005735Zinc finger, LSD1-type
PfamPF069435.7E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-1082111IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-1385109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQSQLVCSGC RSVLLYPRGA ANVCCAICST ITSVPPPGME MSQIICGGCR TLLMYSRGAT  60
SVRCSCCHTI NLARQASNQV AHVNCGQCNT TLMYPYGAPS VKCAVCNYIT NIGMGNMRVP  120
TPLHRPNGAT MPVPMPSTST SLPHTYSQTV VVENPMSVDE SGKLVSNVVV GVTSEKK*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062482.11e-102protein LSD1 isoform X1
RefseqXP_028062483.11e-102protein LSD1 isoform X1
SwissprotQ2QMB32e-72LOL2_ORYSJ; Protein LOL2
TrEMBLA0A2G5D8G51e-124A0A2G5D8G5_AQUCA; Uncharacterized protein
STRINGAquca_026_00333.11e-117(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-71LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]