PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G178700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HD-ZIP
Protein Properties Length: 824aa    MW: 90866.9 Da    PI: 6.9076
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G178700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-181270357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aqcoe1G178700.1.p 12 KYVRYTPEQVEALEKFYMECPKPSSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 70
                       6789*****************************************************97 PP
2START160.21.6e-501613692205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+++l+d++ W ++++  e++ v+ +   g++
  Aqcoe1G178700.1.p 161 IAEETLTEFLSKATGTAVNWVQMPGMKPGPDSIGIVAVSHNCDGVAARACGLVSLEPM-RVAKVLKDRPSWFRDCRCLEVVTVLPTRndGTI 251
                        6899******************************************************.8888888888*******9999999987667*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a++++v+ Rdf+ +Ry+  l++g++vi+++S++ ++  p     +s+vRae+lpSg+li+p+++  s + +v+hvdl++r++++
  Aqcoe1G178700.1.p 252 ELIYMQTYAPTTMVAaRDFWLLRYTTGLEDGSLVICERSLNTTTGGPVgpaAPSFVRAEMLPSGYLIRPCDGSSSIINIVDHVDLDARSVPE 343
                        ***********************************************9999***************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l+ s ++ +++ + a+l+++++
  Aqcoe1G178700.1.p 344 VLRPLYDSPQILAQRSTIAALRHLRQ 369
                        *********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.791771IPR001356Homeobox domain
SMARTSM003891.8E-15975IPR001356Homeobox domain
PfamPF000463.6E-161270IPR001356Homeobox domain
CDDcd000861.81E-161271No hitNo description
SuperFamilySSF466895.56E-161272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-181471IPR009057Homeodomain-like
CDDcd146865.06E-664103No hitNo description
PROSITE profilePS5084826.711151351IPR002913START domain
CDDcd088753.29E-68155371No hitNo description
Gene3DG3DSA:3.30.530.205.9E-22159351IPR023393START-like domain
SMARTSM002346.7E-40160370IPR002913START domain
SuperFamilySSF559611.65E-36161372No hitNo description
PfamPF018523.4E-48161369IPR002913START domain
PfamPF086701.5E-50678822IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MASSSKQMDT SKYVRYTPEQ VEALEKFYME CPKPSSLKRQ QLIRECPILS NIEPKQIKVW  60
FQNRRCREKQ KTESSRLQTV NRKLSAMNKL LMEENERLQK QVSRFVYENG YMKQQLTNPA  120
AVTADLKCDS VVPTGHHQQQ QNSTPLHPQR DANNPAGLLA IAEETLTEFL SKATGTAVNW  180
VQMPGMKPGP DSIGIVAVSH NCDGVAARAC GLVSLEPMRV AKVLKDRPSW FRDCRCLEVV  240
TVLPTRNDGT IELIYMQTYA PTTMVAARDF WLLRYTTGLE DGSLVICERS LNTTTGGPVG  300
PAAPSFVRAE MLPSGYLIRP CDGSSSIINI VDHVDLDARS VPEVLRPLYD SPQILAQRST  360
IAALRHLRQI AQESSGETQY GGGRQPAVLR TFSQRMCRGF NDAVNGFADD GWSLLANDGV  420
EDVTVSINSS PNKLIGLQGG NALAIRGGVI CAKTSMLLQD VPPALLVRFL REHRSEWADS  480
GIDAYSAASL KARPCGIPNA RRCFSSGHVI LPLSHTLEHE EFLEVIRLEG NGFPQDDLLQ  540
DMYLLQLCSG MDENATGASA QLVFSPFDES FADNVTLLPS GFRVIPLDPK TDGRATRTLD  600
LTSSLEEGPS GNNYNLRSVV TIAFQFTCDN HYQESMVAMA RQYVRSIVGS VQRVANAIAP  660
SRLGSQPKSL PGSPEALTLA RWICRSYRLL TGVELLKADS QAGDSLLKLL WHHSDAIMCC  720
SLRTNASPVF TFANQAGLDM LETTLVALQD IMLDKILNEA GRKTLCSEFS KIMQQGYCHL  780
PAGICVSSMG RSVAYEQAIA WKVLNEDDAH HCLAFMFMNW AFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247499.10.0PREDICTED: homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2G5D9G00.0A0A2G5D9G0_AQUCA; Uncharacterized protein
STRINGAquca_026_00358.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]