PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G178600.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YA
Protein Properties Length: 214aa    MW: 23672 Da    PI: 7.7552
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G178600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.21.8e-30107176158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk............ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rak+e+e+k             ++++ kpylheSRh hAlrR+Rg+gGrF
  Aqcoe1G178600.5.p 107 EEPVYVNAKQYHGILRRRQSRAKAESENKmlkcrkvrtcstPESQNIKPYLHESRHLHALRRARGCGGRF 176
                        69*************************************99778999**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-31105179IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.222106179IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.4E-26108176IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSSSVEDYSS NSDNSRADGQ HQHSESQTQS QSQSPASGTV HSNLAPFSAE YMMPPHLEVG  60
HAVAPPAYPY PDPYYRSIFN PYGAQPMIHP HLMGIQAAVP LPSDAVEEPV YVNAKQYHGI  120
LRRRQSRAKA ESENKMLKCR KVRTCSTPES QNIKPYLHES RHLHALRRAR GCGGRFLNVK  180
PDENEENNAA SHDSTQRDTG DSNKQNSSSE KSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-17106180162NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241195.12e-79PREDICTED: nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP17e-49NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2G5D8K71e-156A0A2G5D8K7_AQUCA; Uncharacterized protein
STRINGAquca_026_00359.11e-157(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-41nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]