PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G178600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-YA | ||||||||
Protein Properties | Length: 201aa MW: 22227.3 Da PI: 7.4381 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.5 | 4.4e-33 | 107 | 163 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+k+ k+rkpylheSRh hAlrR+Rg+gGrF Aqcoe1G178600.4.p 107 EEPVYVNAKQYHGILRRRQSRAKAESENKM-LKCRKPYLHESRHLHALRRARGCGGRF 163 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.8E-36 | 105 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.622 | 106 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.3E-28 | 108 | 163 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.6E-24 | 109 | 131 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 111 | 131 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 5.6E-24 | 140 | 163 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSSSVEDYSS NSDNSRADGQ HQHSESQTQS QSQSPASGTV HSNLAPFSAE YMMPPHLEVG 60 HAVAPPAYPY PDPYYRSIFN PYGAQPMIHP HLMGIQAAVP LPSDAVEEPV YVNAKQYHGI 120 LRRRQSRAKA ESENKMLKCR KPYLHESRHL HALRRARGCG GRFLNVKPDE NEENNAASHD 180 STQRDTGDSN KQNSSSEKSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-21 | 106 | 167 | 1 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010241195.1 | 3e-83 | PREDICTED: nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Swissprot | Q84JP1 | 2e-52 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2G5D8N4 | 1e-146 | A0A2G5D8N4_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_026_00359.1 | 1e-120 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 7e-45 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G178600.4.p |
Publications ? help Back to Top | |||
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