PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe1G176800.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 527aa MW: 58250.9 Da PI: 7.113 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.3 | 2.1e-16 | 334 | 380 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Aqcoe1G176800.5.p 334 VHNLSERRRRDRINEKMRALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 380 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-20 | 328 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.146 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.87E-16 | 333 | 384 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.9E-21 | 334 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.4E-14 | 334 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-18 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 527 aa Download sequence Send to blast |
MNQSVANNWN MENHLFPTDN QKRSMGADNE LVELLWRNGQ VVQQSQAQTH RKPGAVHNEL 60 GHKKKPDHPA RDVDSFMNLS NLIEEDETES WIQYPLDDSL SGDFCASFFY DLANSHPIEK 120 EKTIKHFGTS EESNVLTTNS VLKSQQHMFR QPNNISFAEN STQQDPFGRL ERIENFPHFS 180 RPIKAEIGTS NVPLRGTESG LMTGGDVGES SVMTIGSSHC GSNQMTNEAD RSNAVGSTGM 240 CGGPNKDTNR KVVPQCERGL TETLETTITS SSGGSGGSYI GTDKQSTSTQ RHKRKGRDAD 300 ESECQSEDAE FESAGANKIP QRSTSTRRSR AAEVHNLSER RRRDRINEKM RALQELIPHC 360 NKSDKASMLD EAIEYLKSLQ LQVQMMWMGS GMAPMMFPGV QHYMSRMSMG MGTHHSLSSI 420 HSPMQLPRVS LVDQSMTSTR LPNHPAMCPP VLNGVNFQNA MQNPDFSQPY GRHMGFHHMQ 480 TPQSMNIFGY GPQIAQQLPK IGQPSSSGAP CHGGSPKDKT PSGKLG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 338 | 343 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_026391724.1 | 0.0 | transcription factor PIF4-like isoform X1 | ||||
Refseq | XP_026391726.1 | 0.0 | transcription factor PIF4-like isoform X1 | ||||
TrEMBL | A0A2G5D8N9 | 0.0 | A0A2G5D8N9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_026_00376.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20180.3 | 6e-46 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe1G176800.5.p |