PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G176800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 536aa    MW: 59369.2 Da    PI: 7.2202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G176800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.2e-16343389455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Aqcoe1G176800.1.p 343 VHNLSERRRRDRINEKMRALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 389
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20337403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-16342393No hitNo description
Gene3DG3DSA:4.10.280.101.0E-20343397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-14343389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-18345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MYRFSCCNLM NQSVANNWNM ENHLFPTDNQ KRSMGADNEL VELLWRNGQV VQQSQAQTHR  60
KPGAVHNELG HKKKPDHPAR DVDSFMNLSN LIEEDETESW IQYPLDDSLS GDFCASFFYD  120
LANSHPIEKE KTIKHFGTSE ESNVLTTNSV LKSQQHMFRQ PNNISFAENS TQQDPFGRLE  180
RIENFPHFSR PIKAEIGTSN VPLRGTESGL MTGGDVGESS VMTIGSSHCG SNQMTNEADR  240
SNAVGSTGMC GGPNKDTNRK VVPQCERGLT ETLETTITSS SGGSGGSYIG TDKQSTSTQR  300
HKRKGRDADE SECQSEDAEF ESAGANKIPQ RSTSTRRSRA AEVHNLSERR RRDRINEKMR  360
ALQELIPHCN KSDKASMLDE AIEYLKSLQL QVQMMWMGSG MAPMMFPGVQ HYMSRMSMGM  420
GTHHSLSSIH SPMQLPRVSL VDQSMTSTRL PNHPAMCPPV LNGVNFQNAM QNPDFSQPYG  480
RHMGFHHMQT PQSMNIFGYG PQIAQQLPKI GQPSSSGAPC HGGSPKDKTP SGKLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026391724.10.0transcription factor PIF4-like isoform X1
RefseqXP_026391726.10.0transcription factor PIF4-like isoform X1
TrEMBLA0A2G5D9K00.0A0A2G5D9K0_AQUCA; Uncharacterized protein
STRINGAquca_026_00376.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.37e-46phytochrome interacting factor 3-like 5