PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G155600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 568aa    MW: 61386.1 Da    PI: 7.9752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G155600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.9e-10190214226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C +++ t tCk+G++CkF H+
  Aqcoe1G155600.1.p 190 GEKDCAHYMLTRTCKFGESCKFDHP 214
                        7889********************8 PP
2zf-CCCH27.55.3e-09241267127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C++f++t  Ck+G rCkF+H++
  Aqcoe1G155600.1.p 241 PGQPDCPYFLKTQKCKFGFRCKFNHPK 267
                        5789*********************96 PP
3zf-CCCH38.51.9e-12290314327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+f+++tG Ck+G++C+F+H++
  Aqcoe1G155600.1.p 290 EPPCSFYMKTGKCKFGPTCRFHHPR 314
                        79*********************96 PP
4zf-CCCH37.34.5e-12372395326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        ++ C+f+++tG CkyG++C+++H+
  Aqcoe1G155600.1.p 372 EVDCPFYLKTGSCKYGATCRYNHP 395
                        689********************9 PP
5zf-CCCH40.64.3e-13455478326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        + +C+f+++tG+Ck+G++CkF+H+
  Aqcoe1G155600.1.p 455 QIECDFYMKTGECKFGEKCKFHHP 478
                        568********************9 PP
6zf-CCCH39.31.1e-12509534227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +t +C+f+++tGtCkyG +C+F H+p
  Aqcoe1G155600.1.p 509 GTIICPFYLKTGTCKYGITCRFDHPP 534
                        6889********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.263188216IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034188215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5189215IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8190214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493240268IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013240267IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6242267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5245269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53287315IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6287314IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9290314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6290315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6292314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802369397IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6369396IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9372395IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5373396IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4375394IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234452480IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7452479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6454481IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10456478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5458478IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314507535IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7507534IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10509534IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6509534IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5510532IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MTNQIYGYIP TTYSNVYTTS RTVTDPYALS SDPLLSSSSS SDQYSSSKYN SSAMDHHLHH  60
RGGGGGGGGS SLMYPNNNDA TTATYMQYGN GTTSSTDIGA AGVFSLGSRI SSSIAAPLPS  120
NGFDVSAVSG GYDPVLLGMK RQNEAFYHQS VLGNHNTFGQ NEALFSTNTL AKRLRLESST  180
NLPIYPQRPG EKDCAHYMLT RTCKFGESCK FDHPIWVPEG GIPDWKEVPL APSSELLPER  240
PGQPDCPYFL KTQKCKFGFR CKFNHPKDKI VSSIPLATVN VSALPERPSE PPCSFYMKTG  300
KCKFGPTCRF HHPRDIQIPP PSDQENGNSI QIESAVKDDV TAIGDVKSVK PFVPFTPALL  360
HNSKGLPVRA GEVDCPFYLK TGSCKYGATC RYNHPDRHAI YPPVAAGLTN AVISSPASSL  420
NFGVINPAAS ILPAIDPRLA QTTFGPTVYP QRPGQIECDF YMKTGECKFG EKCKFHHPVD  480
RSAPMPSMTN QAVQQNVKLT LAGLPRREGT IICPFYLKTG TCKYGITCRF DHPPPGEAIA  540
MATVQGTSSS VGGEGDKGTE TTQEPQE*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260864.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2G5D2150.0A0A2G5D215_AQUCA; Uncharacterized protein
STRINGAquca_030_00259.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)