PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe1G154000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29857.8 Da PI: 7.4972 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll ++ ++G +W+ I+++ g+ R++k+c++rw +yl Aqcoe1G154000.1.p 14 RGAWTPEEDGLLSAYIMRYGHWNWREIPKYAGLSRCGKSCRLRWMNYL 61 89******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 3e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE+el++++++++G++ W++Ia+ ++ gRt++++k++w+++l Aqcoe1G154000.1.p 67 RGNYTREEEELIINLHEKFGKR-WSAIAASLP-GRTDNEIKNHWHTHL 112 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.607 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.6E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.24E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.507 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-13 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MGRFTVCPKT GLKRGAWTPE EDGLLSAYIM RYGHWNWREI PKYAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY TREEEELIIN LHEKFGKRWS AIAASLPGRT DNEIKNHWHT HLKKRTKQNT 120 TSTKAKRKPV GCETLRLKES ANCYQAISRP LILESSGFLP MSPEKSCDIP SSSADSEVEI 180 IQKQVTYESP ISSSDAVSDF SGSFWTDEPF LLEDILNMSE DVTSVLVDPS FQFPLSPLGR 240 DIYPYDLYHD YDMDIFFNH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | Q9LTC4 | 1e-58 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A2G5D1Z2 | 0.0 | A0A2G5D1Z2_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_030_00245.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31180.1 | 9e-61 | myb domain protein 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe1G154000.1.p |