PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G142700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | ARF | ||||||||
Protein Properties | Length: 690aa MW: 75670.1 Da PI: 6.8252 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.5e-23 | 113 | 214 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF Aqcoe1G142700.2.p 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL-- 200 89****************************996555555..8999*********************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++++ l+v+++r+ Aqcoe1G142700.2.p 201 RTENGDLCVGIRRA 214 4588999****997 PP | |||||||
2 | Auxin_resp | 114 | 1.3e-37 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as++++FevvY+Prast+eF+vk+++v++++++k+s GmRfkmafetedss++++ +Gt+++ + +dp+rWpnS+Wr L+ Aqcoe1G142700.2.p 282 AATLASKGQPFEVVYYPRASTPEFCVKASSVRASMRIKWSSGMRFKMAFETEDSSRISWfMGTISSAQVADPIRWPNSPWRFLE 365 68899****************************************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-36 | 106 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-28 | 108 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-20 | 112 | 213 | No hit | No description |
SMART | SM01019 | 8.1E-21 | 113 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-21 | 113 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 113 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.9E-33 | 282 | 364 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.998 | 603 | 686 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MDETEKCLDS QLWHACAGGM VHMPLVNSKV YYFPQGQAEH THGAVDFGNS SRIPALILCR 60 VAVVNFKADP ETDEVYAKIR LVPLRSNEPD YYDDNDEIAD TNGSEAPDKL ASFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYSADPPV QTVLAKDVHG EIWKFRHIYR GTPRRHLLTT 180 GWSTFVNQKK LIAGDSIVFL RTENGDLCVG IRRAKRGLGG GPESPSGWNP TIGNGGSPYG 240 GFSVFLREDD TRLMRNSNGG NPNFGGSLRG RGKVRPESVI EAATLASKGQ PFEVVYYPRA 300 STPEFCVKAS SVRASMRIKW SSGMRFKMAF ETEDSSRISW FMGTISSAQV ADPIRWPNSP 360 WRFLEVTWDE PDLLQNVKRV SPWLVELVSN MPTIHMSPFS PPRKKLRLPQ HPDFPLDGQL 420 PMPSFSSNTL GSSSPLCCLS DNTPAGIQGA RHAQFGISLS DLHLNKLQSG LFPACFQRFD 480 HVAPPSRIPN GLMMGNPNNT ESVSCLLTIG NSNQSSKKSD EAKTPQFVLF GQPILTEQQI 540 SLSFSAEAVS PVLNGSGSSD GNSDKTAKVS DDSDSAPPPR SGQGNPVFPQ YKDHRMTELD 600 LETGHCKVFM ESEDVGRTLD LSVLGSYEEL YRKLANMFGV ERSETLSHVL YKDATGAVKH 660 TGDEPFSEFV KAAKRLTVLT DSGKENVGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-77 | 8 | 386 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010253698.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2G5D1F6 | 0.0 | A0A2G5D1F6_AQUCA; Auxin response factor | ||||
STRING | Aquca_030_00152.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G142700.2.p |
Publications ? help Back to Top | |||
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