PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G142700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 717aa    MW: 78587.4 Da    PI: 6.9741
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G142700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23113214199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   
  Aqcoe1G142700.1.p 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL-- 200
                        89****************************996555555..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +++++ l+v+++r+
  Aqcoe1G142700.1.p 201 RTENGDLCVGIRRA 214
                        4588999****997 PP
2Auxin_resp1141.4e-37282365183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ as++++FevvY+Prast+eF+vk+++v++++++k+s GmRfkmafetedss++++ +Gt+++ + +dp+rWpnS+Wr L+
  Aqcoe1G142700.1.p 282 AATLASKGQPFEVVYYPRASTPEFCVKASSVRASMRIKWSSGMRFKMAFETEDSSRISWfMGTISSAQVADPIRWPNSPWRFLE 365
                        68899****************************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-36106217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-28108216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-20112213No hitNo description
SMARTSM010198.1E-21113215IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943113215IPR003340B3 DNA binding domain
PfamPF023622.9E-21113214IPR003340B3 DNA binding domain
PfamPF065078.3E-33282364IPR010525Auxin response factor
PROSITE profilePS5174519.998603686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MDETEKCLDS QLWHACAGGM VHMPLVNSKV YYFPQGQAEH THGAVDFGNS SRIPALILCR  60
VAVVNFKADP ETDEVYAKIR LVPLRSNEPD YYDDNDEIAD TNGSEAPDKL ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYSADPPV QTVLAKDVHG EIWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LIAGDSIVFL RTENGDLCVG IRRAKRGLGG GPESPSGWNP TIGNGGSPYG  240
GFSVFLREDD TRLMRNSNGG NPNFGGSLRG RGKVRPESVI EAATLASKGQ PFEVVYYPRA  300
STPEFCVKAS SVRASMRIKW SSGMRFKMAF ETEDSSRISW FMGTISSAQV ADPIRWPNSP  360
WRFLEVTWDE PDLLQNVKRV SPWLVELVSN MPTIHMSPFS PPRKKLRLPQ HPDFPLDGQL  420
PMPSFSSNTL GSSSPLCCLS DNTPAGIQGA RHAQFGISLS DLHLNKLQSG LFPACFQRFD  480
HVAPPSRIPN GLMMGNPNNT ESVSCLLTIG NSNQSSKKSD EAKTPQFVLF GQPILTEQQI  540
SLSFSAEAVS PVLNGSGSSD GNSDKTAKVS DDSDSAPPPR SGQGNPVFPQ YKDHRMTELD  600
LETGHCKVFM ESEDVGRTLD LSVLGSYEEL YRKLANMFGV ERSETLSHVL YKDATGAVKH  660
TGDEPFSEFV KAAKRLTVLT DSGKENVGRT WMKGLHDAEN GLNSSNKRGG LLSMFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-73838619353Auxin response factor 1
4ldw_A2e-73838619353Auxin response factor 1
4ldw_B2e-73838619353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253698.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G5D1G70.0A0A2G5D1G7_AQUCA; Auxin response factor
STRINGAquca_030_00152.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]