PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G138500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 416aa    MW: 47940.2 Da    PI: 7.6294
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G138500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.8e-131150342
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       i + + r+ tf kR +g+ KK +ELS+LC++++++i +++
  Aqcoe1G138500.1.p 11 IRDPRVRNSTFVKRNKGLKKKVHELSTLCGVDACMISYGP 50
                       66778899******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.81E-17191IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.783161IPR002100Transcription factor, MADS-box
CDDcd002666.09E-18273No hitNo description
PRINTSPR004041.5E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-131150IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGRAKLKMEL IRDPRVRNST FVKRNKGLKK KVHELSTLCG VDACMISYGP MHNDHPINPA  60
DTWPETPFNR DKVLQIIDHY LQHCKDGLWK RKFSLGDFYK VQKKKVDDEI TKMRNKNNEV  120
EYLVWAHHIN DLSVDQLNQL RVALDSKLEG INYRMESMKK ENQSYSEGGL QTIEYTYNPS  180
PLNQIPYSVR NTYHGYGWNN DLAMMKMETI PLNYHMKPMH SLSNLPVICD QDSTMNTMMS  240
LNGYNGDRIN MVPMDNLFHP ESITKPPCLD NGVLYSNEKS SFMNERPSTA STNMQPMPWS  300
NFYYMMQGSS DQKPLNAGYA VNEESYSTTA NPTISINGYN VDNIIMIPME NQSFTESKNP  360
YQNLSYMNER TYLPTNMQPC MPSLHLPNYR MSESSDRKAS AKSQNSGNAD HESRY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DPI51e-177A0A2G5DPI5_AQUCA; Uncharacterized protein
STRINGAquca_017_00589.11e-178(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.16e-16M-type_MADS family protein