PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G138000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 575aa    MW: 64542.2 Da    PI: 9.1862
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G138000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-10450497448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        WT  E  llvd+v q+G g+W+ I r++     +Rt  ++k++w+++l
  Aqcoe1G138000.1.p 450 WTLSEVMLLVDGVSQYGVGRWTEIKRMLFsasAHRTSVDLKDKWRNLL 497
                        **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.778442501IPR017930Myb domain
SuperFamilySSF466895.53E-16444523IPR009057Homeodomain-like
SMARTSM007173.3E-9446499IPR001005SANT/Myb domain
CDDcd116607.32E-20448498No hitNo description
PfamPF002494.5E-7449497IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-11449498IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MLSEPANRLT YKFVQVERDG SFMPHSDDEY MDVEHLLADP RNEMDFVDGV LNFDSGKCLE  60
NERFSCAVDY QQLNADSGDL CSSTLQEGRE DSKFEFVDGI LRGADNVHLH IEDVLSNALD  120
DYLLDEFSEK VPDYDYAPSK GPQKGINNLD NYYQGLNERD QGAVEISSLV TPTVSVREAA  180
SDKNSLDKMT MRELQKTFKS TFGRETSVKN KPWLKRHILF GLQSGSCLLE SGISFKDNAG  240
NLISTSSEDS PGRVYCSITS GLSNKNKRVG RVVKSRGDVS RYEPLSSGEI GASQTHKRLR  300
RPTQRYIEEL SNLKSRSCSG RLKLRASPRD ELGQARSHNQ HHRKAFGATP LVYRQDATKG  360
SGILLPFALH VRKRRSKRNA SNASLAVKGQ ASEDYQVESG PSPVVSQHSE DNQDESESFP  420
VESQDESSDD SFSRSRSDIG EHRRKLHKMW TLSEVMLLVD GVSQYGVGRW TEIKRMLFSA  480
SAHRTSVDLK DKWRNLLRAS NGRSLGKRKV TYRQKQTKHS IPQSVLRRVS ELAIIYPYPR  540
QRKSKIACSV STPMNSTCVS SVCTSRKARK ESLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262885.11e-151PREDICTED: uncharacterized protein LOC104601289
TrEMBLA0A2G5D1990.0A0A2G5D199_AQUCA; Uncharacterized protein
STRINGAquca_030_00113.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-42TRF-like 6