PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G133600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family E2F/DP
Protein Properties Length: 372aa    MW: 40826.6 Da    PI: 6.2017
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G133600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP855.6e-27118200271
            E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                 +kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Aqcoe1G133600.1.p 118 SGNGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnsrpdspdrqqyYEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 200
                        789********...*****999******************************9899*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.0E-1253371IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.1E-45113206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.2E-34117200IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-24119200IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.26E-21120201IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.71E-41205308IPR014889Transcription factor DP, C-terminal
SMARTSM011381.3E-66207369IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.02E-40207320No hitNo description
PfamPF087813.2E-40208340IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVVIGEKNQE DEEMKVGSIS KGGPTRSWGT TASAQSISTS GSVGSPLSRS ESATATTITP  60
ARENTFIRLN HLNIQEEDVA SQTAVAGETQ DSQVGIESID ASGKKKKRGQ RAVGGDKSGN  120
GLRQFSMKVC EKVESKGRTT YNEVADELVA EFADPNSRPD SPDRQQYYEK NIRRRVYDAL  180
NVLMAMDIIS KDKKEIQWKG LPHTSASDIE ELKSERIGLK NRVEKKAAYL QELEEQSVGL  240
QNLIQRNEQM YESGKMPTGG VALPFILIQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD  300
DNYVLKAMRL GKIPQDADDT HNATATGGES SSIHSMPQSQ IEHPIRSTAS GRPPTSPPLP  360
GILKARSKHD H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-37111206194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241817.10.0PREDICTED: transcription factor-like protein DPB
RefseqXP_010241818.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-143DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G5D1400.0A0A2G5D140_AQUCA; Uncharacterized protein
STRINGAquca_030_00076.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-145Transcription factor DP