PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G111700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | C2H2 | ||||||||
Protein Properties | Length: 312aa MW: 33430.3 Da PI: 4.4362 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 285 | 307 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ L++H + H Aqcoe1G111700.1.p 285 SCKSCSKTFNSDGALQSHTKAkH 307 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.340 | 2.6E-4 | 3 | 83 | IPR024057 | Nucleoplasmin core domain |
PROSITE profile | PS50157 | 11.094 | 284 | 311 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 286 | 307 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MSNMQFWGVE VKAGEPLKVE PDDNTLLHLS QAALGEPKKD KGSESVVLSA TVNGQKLVIG 60 TLSTDKCPQI SYDLVFEKEF ELSHNWKNGS VFFCGYKADA EEEGTSDGEN MFGDDSEFEE 120 EEIPVVAAEN GKHVPKVEKA KASDDKAKAA KPVSAAAKPK VETKPSSDEE DDSEDEDDSE 180 EDESEDEDML EASDDSDEDS SEEEEEEEAT PENAKQSKKR PAVSATKTSA PEKKAKLVTP 240 QKSGGDAKKG NTHTATPHPS KQAAKTKGSA DKSKQQTPKS AGQVSCKSCS KTFNSDGALQ 300 SHTKAKHSDG K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270966.2 | 7e-89 | PREDICTED: histone deacetylase HDT1 | ||||
TrEMBL | A0A2G5EGA8 | 0.0 | A0A2G5EGA8_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_009_00987.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 5e-34 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G111700.1.p |