PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G108600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 752aa    MW: 85227.6 Da    PI: 5.9717
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G108600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.53e-1183757461374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA+ v+++d + a++lL+++++++sp gd +qRla++f+ +L+arla+++s+l+++l +++ts    ++ l+a++l+  ++P+ k
  Aqcoe1G108600.1.p 375 LRTLLIHCAQSVAADDRRSANELLKQIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQLCSTLLTKRTS---AADILKAYQLYLAACPFKK 463
                        6789************************************************************999998...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        +s++  Nq+I++  e+++rvHi+Df+i +G+QWp+L+++L++R++gpp+lRiTgv+ p++g   +e++eetg+rL+++Ae+++vpfe+n+ +
  Aqcoe1G108600.1.p 464 ISNFFSNQTIMNISENATRVHIVDFGIYYGFQWPCLIEKLSQREGGPPKLRITGVDLPQPGfrPAERVEETGRRLRNYAESFNVPFEYNA-I 554
                        ************************************************************9*****************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        ak++e++++e+L+++p+E+l+Vn+ ++  +llde+v l+s+r++vLkl+++++P v +    +  ++++ F +rf eal +ys++fd+le++
  Aqcoe1G108600.1.p 555 AKKWETVTIEDLKIDPDEVLIVNCLYRFRNLLDETVVLDSPRNAVLKLIRKMNPAVYIQGIINGAYSAPFFITRFREALFHYSSIFDMLETT 646
                        ******************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +pre+ eri +Er l+gre++nv+aceg+er+er et+++W+ r ++aGF+++pl  + +k a+  ++  + + + ++++s+++++gWk+r 
  Aqcoe1G108600.1.p 647 VPREHPERILLERDLFGREAMNVIACEGSERVERPETYKQWQVRNMRAGFQQLPLLADCMKRARDRVKSSYHKDFVIDQDSQWMLQGWKGRI 738
                        ***********************************************************************888****************** PP

               GRAS 367 LvsvSaWr 374
                        ++++S Wr
  Aqcoe1G108600.1.p 739 IYALSTWR 746
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.882349726IPR005202Transcription factor GRAS
PfamPF035141.0E-115375746IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MVMDSRYRGY SDSMNGLKFN GGVSLPNQNI MNVFKLEETS LDHNYVDLPR VPPDRDYHLN  60
QNGVFPSSSV SHEEDSSEDC DFSDTVLKYI SQMLMEEDME EKSCMFQESS AIQAAEKPFY  120
EILGEKYPPS PNRHPLDHNV ESSVDNSSGN FSQYNSSSST SSNSNPVDNN WVFDLGEYKS  180
TQLQSFPADY TFQATPQSSL NDFVDGLIDS PVSTVIDSPV STVNVPDMYC ENEPAWHFHK  240
GVEEASKFLP NGNLYSNGLF AREPKKEANG IVVKEEKKEE EHSPNGSRGK KNSHRVDIDL  300
EEGRSNKHSA VFIEEPVRTE MFDRVLLCNG NKDNAVSSLQ EALKTEASKN GQSKVSHTGK  360
SRGRKQSAKK DVVDLRTLLI HCAQSVAADD RRSANELLKQ IRQHSSPFGD GNQRLAHCFA  420
DGLEARLAGT GSQLCSTLLT KRTSAADILK AYQLYLAACP FKKISNFFSN QTIMNISENA  480
TRVHIVDFGI YYGFQWPCLI EKLSQREGGP PKLRITGVDL PQPGFRPAER VEETGRRLRN  540
YAESFNVPFE YNAIAKKWET VTIEDLKIDP DEVLIVNCLY RFRNLLDETV VLDSPRNAVL  600
KLIRKMNPAV YIQGIINGAY SAPFFITRFR EALFHYSSIF DMLETTVPRE HPERILLERD  660
LFGREAMNVI ACEGSERVER PETYKQWQVR NMRAGFQQLP LLADCMKRAR DRVKSSYHKD  720
FVIDQDSQWM LQGWKGRIIY ALSTWRPVSD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-543797468375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026403420.10.0scarecrow-like protein 30
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2G5EG450.0A0A2G5EG45_AQUCA; Uncharacterized protein
STRINGAquca_009_00954.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]