PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G076700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-YA | ||||||||
Protein Properties | Length: 332aa MW: 36143.4 Da PI: 8.9623 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.6 | 3.6e-32 | 162 | 218 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p++VNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh hAlrR+Rg+gGrF Aqcoe1G076700.3.p 162 DGPIFVNAKQYHGILRRRQSRAKAELENKL-IKIRKPYLHESRHLHALRRARGCGGRF 218 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-35 | 160 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.483 | 161 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.7E-23 | 164 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-26 | 164 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 166 | 186 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.7E-23 | 195 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MQTECFKEHG GIFQNPIIQP LPLPSLPWWS GLGSQAVYGD SFGQLKAISG DYLTGGNQAA 60 IVPRQGTRGT DQASDKDNHN ASQFSILPGD SKDPGKEEKV HQESLSRQSS QLGYQTCFEL 120 GLGQPLICAN YPYIDQYYGV LTTYGAQTTG RIMLPLNVKS EDGPIFVNAK QYHGILRRRQ 180 SRAKAELENK LIKIRKPYLH ESRHLHALRR ARGCGGRFLT KNGKSGKAGT AQDNSGLRRC 240 SPPSGSTSSE VLQSESRNLN SSKELYGGDS SLSGSEVTSL YSRGGLDRFH IDHLHSSAFY 300 SLSNMIDSGQ GINTTNRWVA AADGCCDLLK V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-17 | 164 | 224 | 4 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247683.1 | 1e-138 | PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X2 | ||||
TrEMBL | A0A2G5EF03 | 0.0 | A0A2G5EF03_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_009_00676.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 3e-55 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G076700.3.p |